| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5557 |
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| Symbol | |
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| ID | 7381465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 556582 |
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| End bp | 559680 |
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| Gene Length | 3099 bp |
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| Protein Length | 1032 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649137 |
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| Product | AcrB/AcrD/AcrF family protein |
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| Protein accession | YP_002547374 |
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| Protein GI | 222106583 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.130118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTATTT CTACACCCTT CATCGCGCGG CCCGTCGCCA CCTCGCTGCT GGGGATCGCC
ATCCTGCTGG GGGGATTGCT GGGGTATACG TCGCTGCCCG TAGCACCATT GCCGCAGGTG
GATTTTCCGA CCATCCGCGT CACCACGCAA TTGCCGGGCG CCGACCCCGA GACCATGGCG
GCCCTGGTGA CAGCGCCGCT GGAAAGGCCG CTTGGCCAGA TCCCGGCACT GGCTTCGATG
ACCTCTTCCA GCGCCTTCGG CATCAGCCAG GTGACGCTGC AATTCAACCT TGACCGTGAT
ATCGATGGTG CTGCGCAGGA CGTGCAGGCG GCAATCAATT CGGCCAGCGG CAGCCTGCCG
AAAACCCTGC CTTATCCGCC GACCTATGCG AAAGTGAACC CGGCGGATAC TCCGACCATC
ACGCTGGCCC TGCATTCCGA TAGCTATCCG ATTCGCGATC TCAGCGACTT CGCCGATACG
ATCATGGCGC AGCGGCTGAG CGAAGTTTCC GGCGTTGGCG ATGTGCGCGT TCAGGGCGGC
GTGCGGCCCG CCATCCGCAT CCAGGCGGAT CTGACGCGGC TTGCCTCCTA TGGGATGTCG
CTGGAGGATC TGCGCACCGC GATTACCAAT GCCAATGTTT CCGGTGCCAA AGGGGCAGTG
GACGGCACCT ATCAATCCTT CACACTCTCG GCCAATGACC AGATCCAGGA CCCGGAAATC
TACCGCGACA CCATCGTCAC CTACAGCAAT AGCGCGCCTG TCCGGTTACG CGATGTCGCC
GATGTGGTCG AAGGGCTGGA AAACAGCCGC GTCGGTGCCT GGTATCAGGG GCATCCGGCG
GTCATCGTCG ATATCATGCG CCAGCCCGGT GCCAATGTCA TCCAGACTGT CGAGGATGTC
CGAAAACAGC TGCCGCGCCT CAAACAGGCG CTTCCCGCCG GGGTCTCGCT CGATATCGTC
AACGACAGGA CGGACACCAT CCGCGCCTCC ATTCACGATG TGCAATGGAC GCTGGCGCTC
AGCGTCGGGC TGGTCATTCT CGTGGTGTTT CTGTTTCTGC GCACGCTGAC GGCGACGATC
ATCGCCGCTG TCGCCCTGCC ACTGTCGTTG ATCGCCACCT TCGGCATCAT GTATTTTGCC
GGTTTCAGCC TCGACAACCT GTCGCTGATG GCGCTGACCA TCGGCACTGG CTTCGTGGTC
GACGATGCCA TCGTGATGAT CGAAAATATC GCCCGTCACA TCGAGGAGGG TGAAAGCCCG
ATGCAGGCCG CCCTGAAGGG GGCGGGCGAA ATCGGCTTCA CCATCATTTC GTTGACGGCC
TCGCTGATCG CGGTCTTCAT TCCGCTGCTG TTCATGACCG GCATTGTCGG GCGGATGTTC
CGCGAATTTG CCCTGACACT GACCATTGCC GTCGTGGTCT CGGCGGTGAT TTCGCTGACG
CTGACGCCAA TGATGTGCGC CCGCATTCTG CGAGCCCCCA AGGAGCGAAA TTCCGGCGTG
CTCGGCATGG TGGACCGTGG CATGGACTGG ATGAACGAAG GCTACCGCCG CAGCGTCGTC
TGGGCTGTCA ATCGCGGCTG GCTGATGCTT GTGCTGACGG GGGTCACGCT TGTAATCACC
GGCCTGCTTT ACGTCACCAT CCCCAAGGGC TTCCTGCCGG TGCAGGATAC CGGGCTGATT
TCTGCCGTCG TGGAAACCGA GCCGACCAGC TCGTTCGATG CGATGAAGCA GACCCAGTCC
CTTGTCGGCA ACCGGCTCCG CGCCGATCCG GCGGTGCAAA GCGTCATTGC GGTGATCGGC
ACCAGCGCCT CCAACCTGAC GCTGAACACG GCAAGCTACA GTATCGTGCT GAAGCCGCTC
GACCAGCGAG ACATCTCGGC GACGGATTTG ATCGACCGGC TGCGGGCCTC CGTTGCCGAT
ATTCCTGGTA TCCATCCGAC CTTTCAGAGC ATTCGCGATA TTTCGATCAG CACGCGGGCC
AGCCGAGCGC CCTATCAATA TACCCTGACC GGCACCAATA CCGCGACCGT CGCCGACTGG
GCCGACCGGC TGGCCCGGCG ACTACAGCAG AACCCGTTGC TGATCGATGT CACATCTGAA
GTGGAAATGG GCGGCGGGCG GCTGGCGATC ACCGTCAATC GCGAGACCGC CGCCCGCCTT
GGCGTCTCCA TGCAGGCGAT CAACGATACG CTCTACGATG CCTTCGGCCA GCGCCAGATC
AGCACCATCT ACGGGCAGGC GAACCAGTAC CGCGTCATTC TTGAGGCCGC CCAGCGGTTT
CAGGGCGATC CGAAATCCCT GGAAAAACTC TATGTCAAAG GCACGAGCGG TGCCATCGTG
CCGCTGAATG CGGTTGCATC GGTCAAGTTT ACCACGGCAC CACTGGTGAT CAGCCGGGAC
GATCAATTCC CCGCCGTCAC CATCAGCTTC GATCTCGCCC GGCACGCATC GCTGAGTGAG
GCAATTGCCG CCATCAAGAG TTCTGAGCGT GACATCAGCA TGCCCGCCTC CATCCAGCGT
CATTATAGCG GCGATACCGA GGAATTCGAC CGCTCGCTGG CGGGAGAGCC CTGGCTGATT
CTGGCGGCGA TCATCACCAT CTATATCGTG CTGGGTCTGC TGTATGAAAG CACCATCCAC
CCGATCACCA TTCTGTCCAC GCTGCCTTCG GCGGGCGTCG GGGCGCTGCT GGCGCTGATG
CTGTTTGGTC AGGATCTGTC GATTATCGCC TTGATCGGCA TTGTTCTGCT GATGGGTATC
GTCAAGAAAA ACGCGATCAT GATGATCGAT TTCGCGCTGG ACGCGGAGCG CAAGGACGGG
CTTAGCGCCC GCGATGCCAT TATCAAGGCC GCCGTCATGC GCTTTCGGCC CATCATGATG
ACCACGCTGG CGGCCCTGTT CGGGGCGCTG CCGCTGGCGC TTGCCCAGGG AACCGGCGCG
GAACTGCGCA TCCCGCTCGG CATCTCGATC ATCGGCGGTC TGCTGCTCAG CCAATTGCTG
ACGCTCTATA CCACGCCTGT CATCTATCTG GCGCTGGATG GAGTGCGCGC CAGGATGCAG
GGAAAGCGTG CGGCTTCCGA TATCGGAGGC CCGTTATGA
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| Protein sequence | MSISTPFIAR PVATSLLGIA ILLGGLLGYT SLPVAPLPQV DFPTIRVTTQ LPGADPETMA
ALVTAPLERP LGQIPALASM TSSSAFGISQ VTLQFNLDRD IDGAAQDVQA AINSASGSLP
KTLPYPPTYA KVNPADTPTI TLALHSDSYP IRDLSDFADT IMAQRLSEVS GVGDVRVQGG
VRPAIRIQAD LTRLASYGMS LEDLRTAITN ANVSGAKGAV DGTYQSFTLS ANDQIQDPEI
YRDTIVTYSN SAPVRLRDVA DVVEGLENSR VGAWYQGHPA VIVDIMRQPG ANVIQTVEDV
RKQLPRLKQA LPAGVSLDIV NDRTDTIRAS IHDVQWTLAL SVGLVILVVF LFLRTLTATI
IAAVALPLSL IATFGIMYFA GFSLDNLSLM ALTIGTGFVV DDAIVMIENI ARHIEEGESP
MQAALKGAGE IGFTIISLTA SLIAVFIPLL FMTGIVGRMF REFALTLTIA VVVSAVISLT
LTPMMCARIL RAPKERNSGV LGMVDRGMDW MNEGYRRSVV WAVNRGWLML VLTGVTLVIT
GLLYVTIPKG FLPVQDTGLI SAVVETEPTS SFDAMKQTQS LVGNRLRADP AVQSVIAVIG
TSASNLTLNT ASYSIVLKPL DQRDISATDL IDRLRASVAD IPGIHPTFQS IRDISISTRA
SRAPYQYTLT GTNTATVADW ADRLARRLQQ NPLLIDVTSE VEMGGGRLAI TVNRETAARL
GVSMQAINDT LYDAFGQRQI STIYGQANQY RVILEAAQRF QGDPKSLEKL YVKGTSGAIV
PLNAVASVKF TTAPLVISRD DQFPAVTISF DLARHASLSE AIAAIKSSER DISMPASIQR
HYSGDTEEFD RSLAGEPWLI LAAIITIYIV LGLLYESTIH PITILSTLPS AGVGALLALM
LFGQDLSIIA LIGIVLLMGI VKKNAIMMID FALDAERKDG LSARDAIIKA AVMRFRPIMM
TTLAALFGAL PLALAQGTGA ELRIPLGISI IGGLLLSQLL TLYTTPVIYL ALDGVRARMQ
GKRAASDIGG PL
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