| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5556 |
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| Symbol | |
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| ID | 7381464 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 555203 |
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| End bp | 556585 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649136 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002547373 |
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| Protein GI | 222106582 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.357056 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA TGACGAAGAT CGTCCTGGTC GGCCTGGTGC TTGTCGGGGC CGGATTGGTT
TATGCTGCCC GCCAACCGCA ATTTGCCGCG ATCACCGCAG GCTGGCTGGG CAAGCCCCAG
GCCGACCGGC AGCGGGGCCG CGATCTCGCC ATTCCCGTTG TAGCCTCTCC GGTGAACCAG
ACGAATGTAC CCGTCTACGT GACCGGCGTC GGCAGCGTCA AACCGTTGAA TACTGTTGTT
ATCCAGCCGC AGGTCAGCGG GCGGATCACG AAGATCGGCT TTCAGGAGGG GCAGGACCTG
AAGAAAGGCG AGTTGATCGC CACGCTGGAT GACGCACTTT ACAAGGCACA GTTGGATGAA
GCGATTGGCA AGAAGGCCCA GGACTCGGCC CAATTAACGT ATGCCATTCT GGAAATGGAG
CGTTTGCAGC GCCTGATCGG CAATTCCGCC ACCACTCAGC AGCAACTGGA CAATCAGGTG
GCGCTGGTGG CGCAATATAA GGCGCAGGTC CAATCCGACC AGGCAGCCAT CGAGGCGGCT
CAGGCTCAGC TGGATTACAC CGTGATCAAG GCGCCGATGG ATGGACGAAC CGGCATTCGC
AATGTCGATG TCGGCAATAT CGTCTCGACC GGTGACACGA CCGGCATCGT CACTCTGTCG
CAGATCAAGC CAATTACCAT CGTGTTTTCC ATTCCGCAGC AGGATCTGGC CCGCGTCAAT
ACCGCCAATG CCAATGGCGC TCTTTCGGTC GATGCCCTCG GCGATGACGG CAAGACGGTC
GTTGCCAACG GCACGCTGAC GGTGGTCGAT AACCAGGTGG ATACCACCAC AGGCACTGTC
CGCTTGCGGG CTGAATTTCC CAACGAAGAT CTGCGGCTGT GGCCTGGCGC TTTCGTCAAT
GCCCGGCTTC TCGTCGAGAC AAAGAAAGAT GTGCTGACGG TTCCGTCTTC GGCCATCCAG
CGCGGTCCTG CGGGTACTTA CGCCTATATT GTTCAGCCAG ACCAGACGGT GAAAATCCAG
GCGGTGACGG TCGAGATGCA GGACGACCAG ATGGCGGTGA TCGCCAAAGG GGTCAGTGCC
GGTGAGACTG TCGTGACGAC CGGTTTCGCC CGGCTACAGG ATGGCGCGCT GGTGCGGGTT
TCGACGCCGC AGGAGGCCGA TCCTGCCAAT ATGGCCGTGC CGTTGGATGA TAACAAGCCG
CGTCAACGCC ATGGTGGCAA CCGTAACAAT GGCCAGGCCC GGCCAAACGC CCATGACCCA
GCCTCGCGGA AAGAGGGCGG TGAAAAACCT CAGGCTGGAT CGAACAGCAA AGCGGAACCG
CCTTCAGCAG AAGGAAAAGA CACTGGCGCA CCCGCAGCCC CACCGGCTGA CGCAGCGAAA
TGA
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| Protein sequence | MKKMTKIVLV GLVLVGAGLV YAARQPQFAA ITAGWLGKPQ ADRQRGRDLA IPVVASPVNQ
TNVPVYVTGV GSVKPLNTVV IQPQVSGRIT KIGFQEGQDL KKGELIATLD DALYKAQLDE
AIGKKAQDSA QLTYAILEME RLQRLIGNSA TTQQQLDNQV ALVAQYKAQV QSDQAAIEAA
QAQLDYTVIK APMDGRTGIR NVDVGNIVST GDTTGIVTLS QIKPITIVFS IPQQDLARVN
TANANGALSV DALGDDGKTV VANGTLTVVD NQVDTTTGTV RLRAEFPNED LRLWPGAFVN
ARLLVETKKD VLTVPSSAIQ RGPAGTYAYI VQPDQTVKIQ AVTVEMQDDQ MAVIAKGVSA
GETVVTTGFA RLQDGALVRV STPQEADPAN MAVPLDDNKP RQRHGGNRNN GQARPNAHDP
ASRKEGGEKP QAGSNSKAEP PSAEGKDTGA PAAPPADAAK
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