Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5539 |
Symbol | |
ID | 7381451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 536254 |
End bp | 538287 |
Gene Length | 2034 bp |
Protein Length | 677 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 643649123 |
Product | signal transduction histidine kinase |
Protein accession | YP_002547360 |
Protein GI | 222106569 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2203] FOG: GAF domain [COG3920] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGCCAAT CATTAAACGA CGACCAGGCC GAGCAGCGGG AGAGACGGCG CCTTGAGGCA CTCAGGGCCT ATGACGTGCT TGACACGCCG CGCGAGAAGG ATTTTGACGA TATTGCCGCC CTCGCCTCGC GGATCTGCGC GACGCCGATC GCCGTCGTCA ATCTGATCGA TGACAGCAGG CAATTCTTCA AGGCGGAAGT CGGTCTTGGC GTGCGCGAGA CACCGTTCGA CAGTTCCTTC TGCGCCAAGG CTATTCTGGA AGACGATTTC CTGATGATAC CGGATGCAAG TCAAGACAGC CGGTTCAATC GCAATCCGCT GGTCACCGGC GAACCCCATC TGCGGTTTTA TGCCGGAGCC GTCCTGAAAA CCGCTGATAA TTTACCCATC GGCACCGTCT GCGTGCTGGG TTTCGAACCC AAGCAGCTGG ATGAGCTTCA ACAGGACACG TTGAAGGTTC TTGCCCGACA GGTGATGGTG CAGCTGGAAT TACGCAAGGC GCTGAAGGAA AAAGCGCGTG AGGCGGAGGT ACAGCGCCGA TTGAGCGAGC GCAGGCTGGC ACGCGTCACG GCCATGGAAC AACAGGACGA GCGCTCGCGA AGCGCCCAGG CGGCCGGCCG GGTCGGCACG TTCGAATTGG ACATCGCTAC CAATACCATG ACGGTTTCCA GCGAATTCTG TCGGGTCTTC GGCATTCCCG TGCAGACGTC CTATCCGGCT TCGGCGATTG AGGATCTGGT GCATGAGGAC GATCGTGGCC TGCGCTCAAA CCCGGTCACA CGGCGAGAGG GTTCGGCCAG CCCTGACGTG GATTATCGGA TCATCCGCGC CGACGATGAT GAATTGCGCT GGATTTCGCG GCGGGCGCGC TTCGTTCACA ACGAAAAAGG CGAGATCACC CGCATGGTCG GCGTGGTCTT CGACACCACC GATGCCAAGC TGAAAGAAGC GAAAAAGGCT GCACTGTTAA AGCTGGGAGA CGAACTTCGC GCCGCCAGCA CTGTGGAAGA GATCACCCAA AGCGCCGCCG CCATCCTGTC GGACGGTCTT GGCGTTGCCC GCGCAGGCTA TGCCGTGGTG GATCGGACCG ACAATAGCTT TGCGGTCGCC TTCGACTGGG CATCCCATGG CACGGTCTCA CTGGCGGGGC GCCATTCTCT CGAGAGATTT TCAGAAACGA TTGAGCACCT GCGCAAGGGA GAGACATTGT CGATCCCCAA CGTCGCCTCA AGCAAATGGC CGACCACAGA AAAGGATGCC TATGCCTCCA TCGGGGTTTC GTCGCTCATC AAGGTACCGA TCCTCAAAGG CGGAAACCTG GTCGGTATTC TCTTTGCCCA TGACGACAAG CCCCGGACAT GGAGCCAGGA TGAACTGGAC TTTACGCGCG GCATTGCCGA CAGAACCTAT GCAGCCCTTG CCAAGGTTCA GGCCGAGGAA GAACAGGAAC TTCTCAACCA CGAACTGAGC CACCGGCTGA AAAATACGCT GGCCATGGTC CAGGCCATTG CCGGGCAGAC ATTGAAGGAC GTCTCGGAAA AGGAAGCCGT CAACGCCTTC CTGGCCCGTC TGCATGCCCT GGGCGCCGCC CATGACGTTC TTCTGCGGCA AAACTGGTCG GCGGCGAAAA TGCGCGATGT GATCGAGAAA GTGCTGGCCT TGCATGCCGA CGGCGACCGT ATTTACGTGG ATGGTCCCGA TCTGGCGCTT GGCCCGAAGG CCGGTCTGTC GCTATCTTTG CTGCTGCATG AACTGGCGAC CAATGCCCTC AAATATGGTG CGCTTTCCAA CGCTAGCGGC CGCGTTTCCG TCAAATGGTG GATCGCCGAC AACGACGCCA TTCCGACCCT GTCGATGACA TGGACGGAAA GCGGTGGACC GACCGTGAGC GAACCGACCC GCAAAGGCTT CGGCTCACGC CTGATCCGCA TGGGACTGGC TGGAACAGGC AATGCCCATA AGGACTATCG CCCGTCCGGC CTGACGGCAA CGTTCCATGC ACCGCTCACC ACAATCCAGG AAACCGGAGA CTAG
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Protein sequence | MRQSLNDDQA EQRERRRLEA LRAYDVLDTP REKDFDDIAA LASRICATPI AVVNLIDDSR QFFKAEVGLG VRETPFDSSF CAKAILEDDF LMIPDASQDS RFNRNPLVTG EPHLRFYAGA VLKTADNLPI GTVCVLGFEP KQLDELQQDT LKVLARQVMV QLELRKALKE KAREAEVQRR LSERRLARVT AMEQQDERSR SAQAAGRVGT FELDIATNTM TVSSEFCRVF GIPVQTSYPA SAIEDLVHED DRGLRSNPVT RREGSASPDV DYRIIRADDD ELRWISRRAR FVHNEKGEIT RMVGVVFDTT DAKLKEAKKA ALLKLGDELR AASTVEEITQ SAAAILSDGL GVARAGYAVV DRTDNSFAVA FDWASHGTVS LAGRHSLERF SETIEHLRKG ETLSIPNVAS SKWPTTEKDA YASIGVSSLI KVPILKGGNL VGILFAHDDK PRTWSQDELD FTRGIADRTY AALAKVQAEE EQELLNHELS HRLKNTLAMV QAIAGQTLKD VSEKEAVNAF LARLHALGAA HDVLLRQNWS AAKMRDVIEK VLALHADGDR IYVDGPDLAL GPKAGLSLSL LLHELATNAL KYGALSNASG RVSVKWWIAD NDAIPTLSMT WTESGGPTVS EPTRKGFGSR LIRMGLAGTG NAHKDYRPSG LTATFHAPLT TIQETGD
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