| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5523 |
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| Symbol | |
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| ID | 7381438 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 520212 |
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| End bp | 520916 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643649110 |
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| Product | phosphoserine phosphatase |
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| Protein accession | YP_002547347 |
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| Protein GI | 222106556 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4359] Uncharacterized conserved protein, possibly involved in methylthioadenosine recycling |
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| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01489] 2,3-diketo-5-methylthio-1-phosphopentane phosphatase |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.406064 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAGCTT TCTGCGATTT TGACGGCACG ATATCGAAAC AGGACGTCAC TGACCTCGTC
CTGGAGCGGT TCGCCCTGCC TGAATGGACC GATATCGAAC AACAATGGGA AGCGGGAGAA
ATCAACTCCG CTGAATGCAT GCGGGCTCAG ATCCGTCTGC TTCAGGCCTA TCGGCATGAG
ATCGACCGGT TTCTCGGTGA GGTCGAAATC GACGCTGGCT TTCCTGAATT TCGTCGGTTC
TGCCTCCAGA ACCATATCCG CCTGACCATC GTCAGCGACG GTGTCGATTA TTTCATTCGC
CGTGTTCTTA GCCATCACGG CATCACCGAT ATCGAAGTGG TTGCCAACCG CATGCTGGAG
CCCTCCTGCG GTAACCCGAC GGTTTTCGAC CTCGACCACC CCTTTGCCAG CCAAAACTGC
GTCACCGGAT CGGGTGTCTG CAAATGCAAT GTCATCCGCT CCGGCGATGC GGATCACATT
TATATCGGCG ATGGCCGCTC GGATTTCTGC GTCTCCAGCC ATGCCGCCAA GCTGATCTTC
GCCAAATCCA AACTGGCGGT CCATTGCCAG GAAAACCGGA TCCCCTTCAT CGCTTACCGC
GATTTCACCG ATATCACAGC CGCACTCAAG ACCTTGAAGA CCAAGTCCCT GGCGATTGGG
GCTGGTGCTG CTGTGACCAC TGTTCCTGCA TCAAAAATAG CTTAG
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| Protein sequence | MQAFCDFDGT ISKQDVTDLV LERFALPEWT DIEQQWEAGE INSAECMRAQ IRLLQAYRHE
IDRFLGEVEI DAGFPEFRRF CLQNHIRLTI VSDGVDYFIR RVLSHHGITD IEVVANRMLE
PSCGNPTVFD LDHPFASQNC VTGSGVCKCN VIRSGDADHI YIGDGRSDFC VSSHAAKLIF
AKSKLAVHCQ ENRIPFIAYR DFTDITAALK TLKTKSLAIG AGAAVTTVPA SKIA
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