| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5520 |
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| Symbol | |
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| ID | 7381435 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 516802 |
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| End bp | 517833 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649107 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002547344 |
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| Protein GI | 222106553 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG4608] ABC-type oligopeptide transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.858577 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGAGC TATCCATGGC GCCTGACCTC CTGATGGATG TCGCCGATCT GAAGAAACAT
TTTCCGATTC ATTCCGGCTT TCTCGGACGC CAGACCGGCG CCGTGCGTGC GGTGGAGAAT
GTCAGTTTTC AGTTGCGCAA AGGCGAGACC CTGGGACTGG TCGGCGAGAG CGGTTCGGGC
AAATCCACCG TCGCCCGGCT GCTGCTGCGG GCTTTTCCGG CCACCGAGGG CCGGGTGACA
TTCCGCCGCC GCAATGGTTC GCTGATCGAT ATCGCCAAGG CGGGCAATGC CGAGATGCGC
GAATTGCGTG ACGAGGTCCA GATGATCTTT CAGGACCCGT ATTCCTCGCT CAATCCGCGC
CTGCGGTTGC TGGAGATTAT CGGTGAGCCG CTGATCAACA AGAAGGTGGC GAGGTCCGAA
ATCGAGGACC GGGTGGCGGA GCTGCTGAAG CTTGTTGGTC TTCGTCCCGA ATTCATGAGC
CGTTATCCGC ATGCCTTTTC TGGCGGTCAG CGTCAGCGCA TCGGCATTGC CCGGGCGCTT
GCCGTCAATC CGAGTTTCAT CGCCGCCGAT GAAGCCGTGT CGGCGCTGGA TGTCTCGGTC
GCGGCCCAGG TTGTCAACCT GATGCAGGAC TTGCAGGAGC AGTTTGGTCT CACCTATCTG
TTTATCACCC ATGACCTGTC AATGGTTGAG CATATCGCCA ACCGCGTCGG CGTCATGTAT
CTCGGCAGGC TGGTGGAAAT TGCCGATACG GCAAGCCTGT TCGACAAGCC GCGCCATCCC
TATACCGAGG CTTTGCTGTC ATCTGTGCCG CAGCCCGATC CCCGCGCCAA TGCCGCCAAG
AAGCGGATCA TCCTCAAGGG TGAAATCCCC AATGCCGCCA AGCCGCCGTC CGGCTGTGTC
TTTCATCCCC GCTGTCCCTA TGCCACCGAT ATCTGCCGCC AGGTGGAGCC GCAACTGGAA
GCGCTAGCTG GCAGCGACAA TGCCGTGCGC TGCCATCGTG CCGCGGAACT GGATCTGGCG
GGCGTTCGCT GA
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| Protein sequence | MTELSMAPDL LMDVADLKKH FPIHSGFLGR QTGAVRAVEN VSFQLRKGET LGLVGESGSG
KSTVARLLLR AFPATEGRVT FRRRNGSLID IAKAGNAEMR ELRDEVQMIF QDPYSSLNPR
LRLLEIIGEP LINKKVARSE IEDRVAELLK LVGLRPEFMS RYPHAFSGGQ RQRIGIARAL
AVNPSFIAAD EAVSALDVSV AAQVVNLMQD LQEQFGLTYL FITHDLSMVE HIANRVGVMY
LGRLVEIADT ASLFDKPRHP YTEALLSSVP QPDPRANAAK KRIILKGEIP NAAKPPSGCV
FHPRCPYATD ICRQVEPQLE ALAGSDNAVR CHRAAELDLA GVR
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