Gene Avi_5520 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5520 
Symbol 
ID7381435 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp516802 
End bp517833 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content61% 
IMG OID643649107 
ProductABC transporter nucleotide binding/ATPase protein (oligopeptide) 
Protein accessionYP_002547344 
Protein GI222106553 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.858577 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACGGAGC TATCCATGGC GCCTGACCTC CTGATGGATG TCGCCGATCT GAAGAAACAT 
TTTCCGATTC ATTCCGGCTT TCTCGGACGC CAGACCGGCG CCGTGCGTGC GGTGGAGAAT
GTCAGTTTTC AGTTGCGCAA AGGCGAGACC CTGGGACTGG TCGGCGAGAG CGGTTCGGGC
AAATCCACCG TCGCCCGGCT GCTGCTGCGG GCTTTTCCGG CCACCGAGGG CCGGGTGACA
TTCCGCCGCC GCAATGGTTC GCTGATCGAT ATCGCCAAGG CGGGCAATGC CGAGATGCGC
GAATTGCGTG ACGAGGTCCA GATGATCTTT CAGGACCCGT ATTCCTCGCT CAATCCGCGC
CTGCGGTTGC TGGAGATTAT CGGTGAGCCG CTGATCAACA AGAAGGTGGC GAGGTCCGAA
ATCGAGGACC GGGTGGCGGA GCTGCTGAAG CTTGTTGGTC TTCGTCCCGA ATTCATGAGC
CGTTATCCGC ATGCCTTTTC TGGCGGTCAG CGTCAGCGCA TCGGCATTGC CCGGGCGCTT
GCCGTCAATC CGAGTTTCAT CGCCGCCGAT GAAGCCGTGT CGGCGCTGGA TGTCTCGGTC
GCGGCCCAGG TTGTCAACCT GATGCAGGAC TTGCAGGAGC AGTTTGGTCT CACCTATCTG
TTTATCACCC ATGACCTGTC AATGGTTGAG CATATCGCCA ACCGCGTCGG CGTCATGTAT
CTCGGCAGGC TGGTGGAAAT TGCCGATACG GCAAGCCTGT TCGACAAGCC GCGCCATCCC
TATACCGAGG CTTTGCTGTC ATCTGTGCCG CAGCCCGATC CCCGCGCCAA TGCCGCCAAG
AAGCGGATCA TCCTCAAGGG TGAAATCCCC AATGCCGCCA AGCCGCCGTC CGGCTGTGTC
TTTCATCCCC GCTGTCCCTA TGCCACCGAT ATCTGCCGCC AGGTGGAGCC GCAACTGGAA
GCGCTAGCTG GCAGCGACAA TGCCGTGCGC TGCCATCGTG CCGCGGAACT GGATCTGGCG
GGCGTTCGCT GA
 
Protein sequence
MTELSMAPDL LMDVADLKKH FPIHSGFLGR QTGAVRAVEN VSFQLRKGET LGLVGESGSG 
KSTVARLLLR AFPATEGRVT FRRRNGSLID IAKAGNAEMR ELRDEVQMIF QDPYSSLNPR
LRLLEIIGEP LINKKVARSE IEDRVAELLK LVGLRPEFMS RYPHAFSGGQ RQRIGIARAL
AVNPSFIAAD EAVSALDVSV AAQVVNLMQD LQEQFGLTYL FITHDLSMVE HIANRVGVMY
LGRLVEIADT ASLFDKPRHP YTEALLSSVP QPDPRANAAK KRIILKGEIP NAAKPPSGCV
FHPRCPYATD ICRQVEPQLE ALAGSDNAVR CHRAAELDLA GVR