| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5518 |
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| Symbol | |
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| ID | 7381434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 515759 |
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| End bp | 516805 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 643649106 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002547343 |
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| Protein GI | 222106552 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.23815 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGAAG ACATGCCCCC AGAGAGCGAA AAGCCTGTTA TCGAGATCGA TAATCTCAAG
GTTCACTTCC AGGTCCGTGA AGGTGTGGTC AGGGCAGTCG ATGGCGTCAG CCTGAAACTG
ATGCCGGGTG AGGTGCTGGG TATCGTTGGA GAAAGTGGTT CTGGAAAATC GATTACGGTG
CGGGCAATCA TGCAATTGCT GCCCAAGGTT GGCAAGATTT CCGATGGCCA GATCCTGTTC
AATGGCGTTC CCGGCAAGAC AACCGACATC GCCAAGCTGG ATCGCAATGG CCGCGATATG
CGCGCCCTGC GCGGTGGCCG GATTGGCATG ATCTTTCAGG AGCCGATGAC GGCATTGTCG
CCGGTACACA CCATTGGCCA TCAGGTGATG ACGCCGATCC TGCTGCACAG CCAAGGCAGC
AAGGCGGATG CCGAAAAACG TGCCAGGGAA GTGCTCGATA TGGTCCGGCT GCCGCGCATC
GATGAGATGA TGCGCAGCTA TCCGCACCAG CTTTCCGGCG GCATGCGCCA GCGCGCCATG
ATCGCCATCG CGCTCGCCTG CCGTCCTCAG GTGTTGATTG CTGACGAGCC GACAACGGCG
CTGGACGTCA CCACCGAGGC GCAGATCCTT GATTTGCTGA AGGAGTTGAG GGCCGAGCTT
GGCATGTCGA TCATCTTCAT CACCCATAAT TTCGGCGTGG TTGCCGATAT CGCTGACCGG
GTCTCGGTGA TGTATCTCGG TAATGTCGTG GAAACCGGCC GGACCGAGGA TATTTTCTAC
GATCCGAAAC ACCCCTATAC GCGGGCATTG CTCAATTCCA TCCCAAGGCT TGGAGCCGCA
AAACAACACC GGCTGAACAC CATTCCTGGC ATGATCCCCG ATCCCTTCAA CCTGCCTGAC
GGTTGCGTGT TTCACCCCAG ATGCGGGCTT GCCAGAGATG GGGACTGTCG CCGGATCTAC
CCAGCCGTCA CCCGGATCGA TGACGAGCGG ATGGCCCGTT GTCATGTTGT CGCGGAAGCG
ATGCAAGCAG GGAGTGTCGC CCAATGA
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| Protein sequence | MSEDMPPESE KPVIEIDNLK VHFQVREGVV RAVDGVSLKL MPGEVLGIVG ESGSGKSITV
RAIMQLLPKV GKISDGQILF NGVPGKTTDI AKLDRNGRDM RALRGGRIGM IFQEPMTALS
PVHTIGHQVM TPILLHSQGS KADAEKRARE VLDMVRLPRI DEMMRSYPHQ LSGGMRQRAM
IAIALACRPQ VLIADEPTTA LDVTTEAQIL DLLKELRAEL GMSIIFITHN FGVVADIADR
VSVMYLGNVV ETGRTEDIFY DPKHPYTRAL LNSIPRLGAA KQHRLNTIPG MIPDPFNLPD
GCVFHPRCGL ARDGDCRRIY PAVTRIDDER MARCHVVAEA MQAGSVAQ
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