| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5515 |
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| Symbol | |
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| ID | 7381431 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 511602 |
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| End bp | 513503 |
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| Gene Length | 1902 bp |
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| Protein Length | 633 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649103 |
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| Product | ABC transporter substrate binding protein (oligopeptide) |
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| Protein accession | YP_002547340 |
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| Protein GI | 222106549 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0171495 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAAAA GCGTTTTGAA ATGGGTTGGC GGTGGGTTTG GCGTCATGCT GTCGCTGAGC
AATGCCTATG CGTTCGGCGA AGCGCCGATG CTGAAGAGCC AGGTCGATGC GGGCAAGCTC
CCGCCGGTCG AACAGCGCCT TCCCAAGAAG CCTGCCATCA TCCCTGTTTA TAACGAGATC
GGCACTTATG GTGGCACGCT CCGGCGTGCC TATAGCGGCA TCGGTGATCG CATGGGGTCC
ACCAAGCTGA TCGAAGAGCG GGCCTTGAAG TTGCAGCAAT CGTCCGACGG CAAGGTCGAT
CTGGTGCAGC GTTTCGTTGA AAGCTGGTCG GCCAATGCCG ATTCAACCGA ATTTACCTTC
ACGCTGCTCG ATGGCATGAA ATGGTCCGAT GGCGTACCGG TCACCACGGA AGATGTGAAA
TTCTGGTATG AGGATCTGTT CCTCAATACC GATCTCAATC CCAGCCCTCC CGGCTTCCTG
TTTTCCGGCG GCAAGCCGAT GAAACTCGAC ATTGTCGATG CGCATACGTT CAAGGTCAGC
TTCGCCCAGC CTTACGCGCT GTTTCCCTAT GTTCTGGCGG TTCAATCGAC GGGATGGCCG
GGCCTCGACA AGCCGAGCTT TATCCAGCCA GCCCATTATC TGAAGAAATT CCTGCCGAAA
TACAGCACAC CGGCAGAGCT GGATGCCATC GTCAAGGCCA AGGGTGTGCC CAATTGGCGG
GCGCTCTGGG ATTTGAAAGG CGTGATCCAG GCCTGGTGGT TGAACCCGGA TCTGCCTGTC
GTGACCGCCT GGAAGGTCGT GACGCCGCCA CCGGCCAGCA CCATCGTTTT TGAGCGTAAT
CCCTATTATT GGGCAACCGA CAAGGCTGGC AACCAGCTTC CCTATATCGA CCGGATCGAG
GCAAAGCTTT TCCAGGACCA TCAGGCGGTC AACCTGATGA TCGTTCAGGG CCAGATCGAC
TTCCAGTCGC GGTTTGTTGA AGCGCGGGAT TATCCGCTGC TCAAGGAAAA CGAACAGGCG
GGCAATTACA CCGTTCATCC TTGGAAGAGC GGTGAAAACC TGGCGATTAT CCCCAATATC
AACGACACCG ACGAGGTGAA ACGCAAGCTG TTTGACGATA TTCGCTTTCG CGAAGCGTTG
AGCATCTCGA TTGACCGCGA AGCCATCAAC GAGACAGTGT TTTCCGGTCT GGCCATGCCA
AGAGCTGCCG CGCCAGCCAA GGGATCGCCC TATTACGACC CCGAATTCGA GACCAAGTGG
ACCGGTCTCG ATATTGATCG CGCCAATACG CTGCTGGACG AAATCGGCCT GAAAAAGGGT
AGCGACGGGT TCCGCACCGG GCCGGATGGC AAGCGCCTCA GCCTGGTGAT CGAGACGATT
GACGAGAATA TTCCGCCTGA GATGGTTGAG GTTATCCGTC AGGGATGGCA GCAGATCGGC
ATTGAAGGGC TGATCCGTTC GGTTGATGAA ACCGCCAGCC TTCAGCATAT CAAATCCGGC
AATTTCGATA TCATCACCGC CTATGCTGAC CGGTTGCTGA TGCCGCAGGC CGATCCGACC
CTGCTGCTTG GCCGCGAATC CTACGCCAAC GCTTATTTCG AATGGTATAA TTCCGCTGGC
AAGAGCGGCA CGGAGCCGCC GAAGGATCAC CCGATCCGCA AGCTGTTTGA TGCCTGGACC
GCCGCGTCAA GCTCCAAGAC TGTTGATGAA GCCAACCAGC ATATGAAGGA CATGATCAAA
GTCATGAAGG ACAATGTCTG GATGATTGGT CTTGTCGGCG AATCTGTCAC GCCCTTCGTC
GTCAACAACA AGATCGGCAA TTTCCCCGAT GTGATGACCA ACGAAGAAGC CCTGCGCAAT
GAAGGCAATG CCATTCCCGC GCAGCTGTTC TTCAAGAAGT GA
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| Protein sequence | MQKSVLKWVG GGFGVMLSLS NAYAFGEAPM LKSQVDAGKL PPVEQRLPKK PAIIPVYNEI
GTYGGTLRRA YSGIGDRMGS TKLIEERALK LQQSSDGKVD LVQRFVESWS ANADSTEFTF
TLLDGMKWSD GVPVTTEDVK FWYEDLFLNT DLNPSPPGFL FSGGKPMKLD IVDAHTFKVS
FAQPYALFPY VLAVQSTGWP GLDKPSFIQP AHYLKKFLPK YSTPAELDAI VKAKGVPNWR
ALWDLKGVIQ AWWLNPDLPV VTAWKVVTPP PASTIVFERN PYYWATDKAG NQLPYIDRIE
AKLFQDHQAV NLMIVQGQID FQSRFVEARD YPLLKENEQA GNYTVHPWKS GENLAIIPNI
NDTDEVKRKL FDDIRFREAL SISIDREAIN ETVFSGLAMP RAAAPAKGSP YYDPEFETKW
TGLDIDRANT LLDEIGLKKG SDGFRTGPDG KRLSLVIETI DENIPPEMVE VIRQGWQQIG
IEGLIRSVDE TASLQHIKSG NFDIITAYAD RLLMPQADPT LLLGRESYAN AYFEWYNSAG
KSGTEPPKDH PIRKLFDAWT AASSSKTVDE ANQHMKDMIK VMKDNVWMIG LVGESVTPFV
VNNKIGNFPD VMTNEEALRN EGNAIPAQLF FKK
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