Gene Avi_5513 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5513 
Symbol 
ID7381429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp508315 
End bp510060 
Gene Length1746 bp 
Protein Length581 aa 
Translation table11 
GC content61% 
IMG OID643649101 
Producthypothetical protein 
Protein accessionYP_002547338 
Protein GI222106547 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3408] Glycogen debranching enzyme 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAAG CCAAGGCGAA TGCACGACCA GACGGACTTG TCGAAAGCGA ATTGCCCCTG 
CAATTGGCGT TCATGGCACC CCGCCTGCAA GGTGATTTTC TGCCGGAAGG ACGGCTTGAA
CTGTCACTCT GGGGTTGCGG CCGGATCGCA AACATCGCCC TTCACCCTTG GACCGGCCCG
TTCGTCTACG CGCCGAACCA GATGACCGGC AAAGACCATG GCCTCTATGT TGCCCAATCC
GCCCCGGTTC TGGTGCTGAC CGGCAGCCGG TTGAAATCCA CACGCCCAGC CCGCCGCTGC
GCCTGGTGGG GCACGCTGAC CAAGCCGGAA AAAGTGGCGC GTAGCGGGGC AAGGCGGATC
ATCCGCACGC CATGGGGTGT GGCCATCGTT GAAGACAAAG GCGACGGCGT GATCGTCATT
GCCGCAGGGG CCAGCGACGC GGAAGCCGAA CGGGGCATGG CCCTACCCGT TGAGACGATC
ATCGCCGAGA GCAAAGCGCA TGTGACGCGC TGCGACCTGC TGCCACAAGC CCCACCGCTG
ATGCGCAGCA TGGCAATCCA GAGCGCCCAT GCTTCGCTCT CCAGCATTCG CCGTGCCGAA
GACGGTTCCT TTCTGGGGCT TGCCGCAGGC CAGGCCTATA GCGCCCCGAC CCGCACCTAT
TACCGCGACG GCTACTGGAC CTTGCAGGCC CTGCTGCATC TCGAACCGAA GGCCGTCCGT
GGCCAGATCG ACCTGCTGGC AACCGGTATC CAGCCCGATG GCGAAAGCCC GAGCGGCGTC
ATTCTGACCG GTCCGAAACA GGGCGAGGAG TGGGAGAAAT TCCGCACGAC GTCTGATGAC
TACAAGATGG AACATCTGCG GCGCACCGAT TGGTGGAGCG ATCATTTCGA CAGTCCGCTG
TTCTTCATCC TGACGATTGG CGATTATATC CGCACCACCG GCGACACAAC CGTCCTTACC
CGTCACTGGA AGACCATCGA AGCGATTTTC CGTCGCTATC AAGGCTTCGA CACTGCCGGA
AACGGCTTGC CTATCAAGCC ACGGCACGAC CGTGACTGGG CCGACAATGT CTATCGCCAT
GGCTATGTCG CCTATGATCT CGGGCTTTGG ATCGGCGCGC TTGACGCGAT TGCTGAATTC
GGCATTCATC AGGACGAGGC TTTGGCCAAG GAGGCAAAGC AAACGGCTAT CACCGCACGC
GCATCGCTGG ACGAAGCGCT TCTCACACCC CATGGCTGGT ATGCCGATTA CGGCCTGAAA
AGTGATTTCG TAGAGGATCA TCTGACACTC GATAGCCTGA CTCTCCTGCG GTTCGATGCC
GTGTCGGATC AACGCGCCAA AACCGTGCTT GGCCATGTCG CGGCCCTGCT TGAGACTCGC
AACAATCCGC GCCAGCCCTA TGGCGACTGG GGTGTGATGT GCGCCTGGCC GCCCTTCAAG
CGACCCGCCG ATACCCGCGC CAAATCCGCC TTTGCCTATC GCTATCACAA CGGCTCCGAC
TGGCCCTATC TCTCAGGTCT CTATGCCGAA CAGCGATTGA AATACGGCAT GGACGGCTGG
GACTATCCAA TGCTGCGCTG GTGGCAGACC AGCCTTGAAA ACGGCTGGAT CGGCTCAGTC
GAATATTTCT CACCGCCTTT TGGCCGAGGC TCGCTGCTCC AGGGCTGGAC AGGCATGCAC
GCCGCCGCCA TCCTGCAATA CAGACCGCAG GTTGAAGCGG CGATTACCAC TGGCCGCATC
GCCTAA
 
Protein sequence
MDKAKANARP DGLVESELPL QLAFMAPRLQ GDFLPEGRLE LSLWGCGRIA NIALHPWTGP 
FVYAPNQMTG KDHGLYVAQS APVLVLTGSR LKSTRPARRC AWWGTLTKPE KVARSGARRI
IRTPWGVAIV EDKGDGVIVI AAGASDAEAE RGMALPVETI IAESKAHVTR CDLLPQAPPL
MRSMAIQSAH ASLSSIRRAE DGSFLGLAAG QAYSAPTRTY YRDGYWTLQA LLHLEPKAVR
GQIDLLATGI QPDGESPSGV ILTGPKQGEE WEKFRTTSDD YKMEHLRRTD WWSDHFDSPL
FFILTIGDYI RTTGDTTVLT RHWKTIEAIF RRYQGFDTAG NGLPIKPRHD RDWADNVYRH
GYVAYDLGLW IGALDAIAEF GIHQDEALAK EAKQTAITAR ASLDEALLTP HGWYADYGLK
SDFVEDHLTL DSLTLLRFDA VSDQRAKTVL GHVAALLETR NNPRQPYGDW GVMCAWPPFK
RPADTRAKSA FAYRYHNGSD WPYLSGLYAE QRLKYGMDGW DYPMLRWWQT SLENGWIGSV
EYFSPPFGRG SLLQGWTGMH AAAILQYRPQ VEAAITTGRI A