| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5511 |
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| Symbol | ugpC |
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| ID | 7381427 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 505709 |
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| End bp | 506806 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 643649099 |
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| Product | ABC transporter nucleotide binding/ATPase protein (sn-Glycerol-3-phosphate) |
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| Protein accession | YP_002547336 |
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| Protein GI | 222106545 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.52689 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGTCGCGC CAGCCCCCTT ATCGACGCAG GCTGCCCAGC CCAAACAGGG GGCAAAGCTT
GAGCTTGTCG CCCTTCGCCG CGCTTTCGGC GCCTATAAAG CGCTTGACGG TATTGATCTC
GCCATCGAAC CGGGCGAATT CATCGCGCTG CTCGGCCCTT CCGGTTGCGG AAAATCCACG
GCGCTGAACT GTATCGCCGG GCTTTTACCG CTGACGGGTG GCGAAATCCG GGTCGGCGGC
CAGCGCATCG ACCAGCTGGA GCCGGAAAAG CGCGGCTTCG GCATGGTCTT CCAGAGCTAT
GCGCTGTTTC CTCATATGAC CGTGCGGCGC AATGTTGGCT TCGGCCTGTC CATGCAAGGC
ATCAAAGGCA CGGAAGCCGA CCGTCGCATC GAAGCAGCCC TCGATCTGGT ACGGCTCGGT
TCGCAGGCGG ATAAATTGCC GGGGCAACTC TCTGGCGGCC AGCAGCAGCG GGTCGCCATT
GCCCGTGCCA TCGTCATCCG CCCGCCAGTC GTGCTGATGG ATGAGCCACT TTCCAACCTG
GATGCCAAGC TGCGGCTGGA AATGCGCGCC GATATCCGCG CCATTCACGA CCAGATCGGC
TCGACAACCA TATACGTCAC CCACGATCAG GATGAGGCAC TGTCGATGGC CGACCGGATC
GTAGTGATGA GCCAGGGCCA TATCCGCCAG ATCGGCACGC CTGAAGATCT CTACATGCGC
CCGAACCATG TCGATGTCGC CGATTTCATG GGCTTTCGCA CCCGGATTGC CGGGCGTATC
ACAGCCGTAT CCGGCGATGA GTCCCAGATC GAAGCCGCGG GCGCAACCAC TGTCGGCACG
CCCCGCCAAC CGGTGCAGGT CGGCGATGCA GCTGTGCTCA GCGTTAGACC GGAGGATATG
ATCGCCGTTC AGGATGGCAG CGGCATTCCG GTGACAATCA AATCCATGGA ATATCGCGGT
AGAGCCTATT TTGGCGCGGC AGAAGCCAGT GACGGGGCAG AGGTGCATTT TCGCTCGGAT
ATCTTGCTGC CACGCGGCAC CGTCACCAGC GTGCGTCCGG CAGAAGGCCG TGCGCTGATC
TTTAAGGGTG ATGCATGA
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| Protein sequence | MVAPAPLSTQ AAQPKQGAKL ELVALRRAFG AYKALDGIDL AIEPGEFIAL LGPSGCGKST
ALNCIAGLLP LTGGEIRVGG QRIDQLEPEK RGFGMVFQSY ALFPHMTVRR NVGFGLSMQG
IKGTEADRRI EAALDLVRLG SQADKLPGQL SGGQQQRVAI ARAIVIRPPV VLMDEPLSNL
DAKLRLEMRA DIRAIHDQIG STTIYVTHDQ DEALSMADRI VVMSQGHIRQ IGTPEDLYMR
PNHVDVADFM GFRTRIAGRI TAVSGDESQI EAAGATTVGT PRQPVQVGDA AVLSVRPEDM
IAVQDGSGIP VTIKSMEYRG RAYFGAAEAS DGAEVHFRSD ILLPRGTVTS VRPAEGRALI
FKGDA
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