| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5507 |
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| Symbol | ugpB |
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| ID | 7381424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 502459 |
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| End bp | 503802 |
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| Gene Length | 1344 bp |
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| Protein Length | 447 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649096 |
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| Product | ABC transporter substrate binding protein (glycerol 3-phosphate) |
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| Protein accession | YP_002547333 |
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| Protein GI | 222106542 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0724145 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAACT ACGCTTTGAA AACCGTGCTG GCCGGCCTGC TGGCTGCCAC GACGCTGGGG
GCAGCACCGG CCATGGCCGA AAAGGTCAAG TTCGAATTCT GGCACGGCCT GAGCGGCGAC
CTTGGCGAGC GCGTCCAGGA CGCCTGCCGC AAGTTCAACG ACAGCCAGGA GAATTTCGAA
ATCGTCTGCA CCTCTCAGAA CGATTACGAT ACCACGCTGC AAAACACCAT TGCTGCCTAC
CGCGCCAAGA AGCAGCCAGC CATTGCCCAG ATCTACGATG CCGGCACGCT GGACCTGATG
CTGTCCAAGG CCTTTATTCC AGCCAAGAAG CTGATGGCCG ACAATGGCTA CAAGATCGAC
TGGAACAATT ATTTCGGCGG CATCGCCAAT TACTACGCCA CGGCGGGCGG CGAATTGCAG
TCCTTCCCGT TCAACTCTTC GACCGCGATG TTCTATTATA ATGTCAGCGC GTTTGAGAAG
GCTGGCATCA CCTTCAAGCC GGATACCTGG GAACATGTCG AGGAAGCAGC CCGCAAGCTG
AAAGCCGCTG GCTATGAATG CCCGCTGGGC TTCAATTTCG ATCCATGGTC GATGCTGGAA
CAGTTTTCCG CCATCCACAA CCAGCCAATC GCCACCAAGG CCAATGGCTA TCAGGGTCTC
GATGCTGAAC TGGTTTTCAA CAAAACCAAG TTCGTTGACC ATGTGAAATT CTTCAAGAAG
ATGCAGGACG AGAAGCTGTT CGTGGTCAAG ACCAAGCAGC TTGGCATGGA TGTCGTTCCG
GCCTTCACCT CGCAGACCTG CCAGATGATC CAGACCTCGA TTGCCGACCA CGGCACCGTC
GGCAAGACGC TGCCCGCTGA CGTCAAATGG GACGTCGCCA TGCTGCCGGT CTGGAAGGGT
ACGGAGCGCC AGAATTCGCT GGTGGGCGGG GCTTCGCTCT GGGTTCTCGC CGGTCGTCCG
GAAGCGGAAT ACAAGGGGGC GGCCGCCTTC CTCAACTTCC TCGGTCAGCC GGACATGGTG
CAATGGTGGT CAACGGTGAC TGGCTATATC CCCGTCACCA AGACCGGTTT CGATGCCATG
AAAGCCAATG GTTTCTACGA TAAGGCACCT TACAAGGGCC GTGAACTGGC CATTGCCAGC
CTGACCTACA CGCCGACATC CGATACCAGC CGCGGTATCC GCCTGGGTAG CTTCACCCAG
ATCCGCAAGG AAGTCTCGAC ATCCTTCGAG GCGATCTTCA TGCAAAATGC CGATGTGCAG
ACCCAGCTGG ACCAGACGGT CGAGCGCGGC AATGCCATCC TGCGCCGCTT TGAGAAAACC
TATGCCGGTC AGAAGCTGAA CTAA
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| Protein sequence | MKNYALKTVL AGLLAATTLG AAPAMAEKVK FEFWHGLSGD LGERVQDACR KFNDSQENFE
IVCTSQNDYD TTLQNTIAAY RAKKQPAIAQ IYDAGTLDLM LSKAFIPAKK LMADNGYKID
WNNYFGGIAN YYATAGGELQ SFPFNSSTAM FYYNVSAFEK AGITFKPDTW EHVEEAARKL
KAAGYECPLG FNFDPWSMLE QFSAIHNQPI ATKANGYQGL DAELVFNKTK FVDHVKFFKK
MQDEKLFVVK TKQLGMDVVP AFTSQTCQMI QTSIADHGTV GKTLPADVKW DVAMLPVWKG
TERQNSLVGG ASLWVLAGRP EAEYKGAAAF LNFLGQPDMV QWWSTVTGYI PVTKTGFDAM
KANGFYDKAP YKGRELAIAS LTYTPTSDTS RGIRLGSFTQ IRKEVSTSFE AIFMQNADVQ
TQLDQTVERG NAILRRFEKT YAGQKLN
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