Gene Avi_5507 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5507 
SymbolugpB 
ID7381424 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp502459 
End bp503802 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content57% 
IMG OID643649096 
ProductABC transporter substrate binding protein (glycerol 3-phosphate) 
Protein accessionYP_002547333 
Protein GI222106542 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0724145 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAAACT ACGCTTTGAA AACCGTGCTG GCCGGCCTGC TGGCTGCCAC GACGCTGGGG 
GCAGCACCGG CCATGGCCGA AAAGGTCAAG TTCGAATTCT GGCACGGCCT GAGCGGCGAC
CTTGGCGAGC GCGTCCAGGA CGCCTGCCGC AAGTTCAACG ACAGCCAGGA GAATTTCGAA
ATCGTCTGCA CCTCTCAGAA CGATTACGAT ACCACGCTGC AAAACACCAT TGCTGCCTAC
CGCGCCAAGA AGCAGCCAGC CATTGCCCAG ATCTACGATG CCGGCACGCT GGACCTGATG
CTGTCCAAGG CCTTTATTCC AGCCAAGAAG CTGATGGCCG ACAATGGCTA CAAGATCGAC
TGGAACAATT ATTTCGGCGG CATCGCCAAT TACTACGCCA CGGCGGGCGG CGAATTGCAG
TCCTTCCCGT TCAACTCTTC GACCGCGATG TTCTATTATA ATGTCAGCGC GTTTGAGAAG
GCTGGCATCA CCTTCAAGCC GGATACCTGG GAACATGTCG AGGAAGCAGC CCGCAAGCTG
AAAGCCGCTG GCTATGAATG CCCGCTGGGC TTCAATTTCG ATCCATGGTC GATGCTGGAA
CAGTTTTCCG CCATCCACAA CCAGCCAATC GCCACCAAGG CCAATGGCTA TCAGGGTCTC
GATGCTGAAC TGGTTTTCAA CAAAACCAAG TTCGTTGACC ATGTGAAATT CTTCAAGAAG
ATGCAGGACG AGAAGCTGTT CGTGGTCAAG ACCAAGCAGC TTGGCATGGA TGTCGTTCCG
GCCTTCACCT CGCAGACCTG CCAGATGATC CAGACCTCGA TTGCCGACCA CGGCACCGTC
GGCAAGACGC TGCCCGCTGA CGTCAAATGG GACGTCGCCA TGCTGCCGGT CTGGAAGGGT
ACGGAGCGCC AGAATTCGCT GGTGGGCGGG GCTTCGCTCT GGGTTCTCGC CGGTCGTCCG
GAAGCGGAAT ACAAGGGGGC GGCCGCCTTC CTCAACTTCC TCGGTCAGCC GGACATGGTG
CAATGGTGGT CAACGGTGAC TGGCTATATC CCCGTCACCA AGACCGGTTT CGATGCCATG
AAAGCCAATG GTTTCTACGA TAAGGCACCT TACAAGGGCC GTGAACTGGC CATTGCCAGC
CTGACCTACA CGCCGACATC CGATACCAGC CGCGGTATCC GCCTGGGTAG CTTCACCCAG
ATCCGCAAGG AAGTCTCGAC ATCCTTCGAG GCGATCTTCA TGCAAAATGC CGATGTGCAG
ACCCAGCTGG ACCAGACGGT CGAGCGCGGC AATGCCATCC TGCGCCGCTT TGAGAAAACC
TATGCCGGTC AGAAGCTGAA CTAA
 
Protein sequence
MKNYALKTVL AGLLAATTLG AAPAMAEKVK FEFWHGLSGD LGERVQDACR KFNDSQENFE 
IVCTSQNDYD TTLQNTIAAY RAKKQPAIAQ IYDAGTLDLM LSKAFIPAKK LMADNGYKID
WNNYFGGIAN YYATAGGELQ SFPFNSSTAM FYYNVSAFEK AGITFKPDTW EHVEEAARKL
KAAGYECPLG FNFDPWSMLE QFSAIHNQPI ATKANGYQGL DAELVFNKTK FVDHVKFFKK
MQDEKLFVVK TKQLGMDVVP AFTSQTCQMI QTSIADHGTV GKTLPADVKW DVAMLPVWKG
TERQNSLVGG ASLWVLAGRP EAEYKGAAAF LNFLGQPDMV QWWSTVTGYI PVTKTGFDAM
KANGFYDKAP YKGRELAIAS LTYTPTSDTS RGIRLGSFTQ IRKEVSTSFE AIFMQNADVQ
TQLDQTVERG NAILRRFEKT YAGQKLN