Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5507 |
Symbol | ugpB |
ID | 7381424 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 502459 |
End bp | 503802 |
Gene Length | 1344 bp |
Protein Length | 447 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 643649096 |
Product | ABC transporter substrate binding protein (glycerol 3-phosphate) |
Protein accession | YP_002547333 |
Protein GI | 222106542 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0724145 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACT ACGCTTTGAA AACCGTGCTG GCCGGCCTGC TGGCTGCCAC GACGCTGGGG GCAGCACCGG CCATGGCCGA AAAGGTCAAG TTCGAATTCT GGCACGGCCT GAGCGGCGAC CTTGGCGAGC GCGTCCAGGA CGCCTGCCGC AAGTTCAACG ACAGCCAGGA GAATTTCGAA ATCGTCTGCA CCTCTCAGAA CGATTACGAT ACCACGCTGC AAAACACCAT TGCTGCCTAC CGCGCCAAGA AGCAGCCAGC CATTGCCCAG ATCTACGATG CCGGCACGCT GGACCTGATG CTGTCCAAGG CCTTTATTCC AGCCAAGAAG CTGATGGCCG ACAATGGCTA CAAGATCGAC TGGAACAATT ATTTCGGCGG CATCGCCAAT TACTACGCCA CGGCGGGCGG CGAATTGCAG TCCTTCCCGT TCAACTCTTC GACCGCGATG TTCTATTATA ATGTCAGCGC GTTTGAGAAG GCTGGCATCA CCTTCAAGCC GGATACCTGG GAACATGTCG AGGAAGCAGC CCGCAAGCTG AAAGCCGCTG GCTATGAATG CCCGCTGGGC TTCAATTTCG ATCCATGGTC GATGCTGGAA CAGTTTTCCG CCATCCACAA CCAGCCAATC GCCACCAAGG CCAATGGCTA TCAGGGTCTC GATGCTGAAC TGGTTTTCAA CAAAACCAAG TTCGTTGACC ATGTGAAATT CTTCAAGAAG ATGCAGGACG AGAAGCTGTT CGTGGTCAAG ACCAAGCAGC TTGGCATGGA TGTCGTTCCG GCCTTCACCT CGCAGACCTG CCAGATGATC CAGACCTCGA TTGCCGACCA CGGCACCGTC GGCAAGACGC TGCCCGCTGA CGTCAAATGG GACGTCGCCA TGCTGCCGGT CTGGAAGGGT ACGGAGCGCC AGAATTCGCT GGTGGGCGGG GCTTCGCTCT GGGTTCTCGC CGGTCGTCCG GAAGCGGAAT ACAAGGGGGC GGCCGCCTTC CTCAACTTCC TCGGTCAGCC GGACATGGTG CAATGGTGGT CAACGGTGAC TGGCTATATC CCCGTCACCA AGACCGGTTT CGATGCCATG AAAGCCAATG GTTTCTACGA TAAGGCACCT TACAAGGGCC GTGAACTGGC CATTGCCAGC CTGACCTACA CGCCGACATC CGATACCAGC CGCGGTATCC GCCTGGGTAG CTTCACCCAG ATCCGCAAGG AAGTCTCGAC ATCCTTCGAG GCGATCTTCA TGCAAAATGC CGATGTGCAG ACCCAGCTGG ACCAGACGGT CGAGCGCGGC AATGCCATCC TGCGCCGCTT TGAGAAAACC TATGCCGGTC AGAAGCTGAA CTAA
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Protein sequence | MKNYALKTVL AGLLAATTLG AAPAMAEKVK FEFWHGLSGD LGERVQDACR KFNDSQENFE IVCTSQNDYD TTLQNTIAAY RAKKQPAIAQ IYDAGTLDLM LSKAFIPAKK LMADNGYKID WNNYFGGIAN YYATAGGELQ SFPFNSSTAM FYYNVSAFEK AGITFKPDTW EHVEEAARKL KAAGYECPLG FNFDPWSMLE QFSAIHNQPI ATKANGYQGL DAELVFNKTK FVDHVKFFKK MQDEKLFVVK TKQLGMDVVP AFTSQTCQMI QTSIADHGTV GKTLPADVKW DVAMLPVWKG TERQNSLVGG ASLWVLAGRP EAEYKGAAAF LNFLGQPDMV QWWSTVTGYI PVTKTGFDAM KANGFYDKAP YKGRELAIAS LTYTPTSDTS RGIRLGSFTQ IRKEVSTSFE AIFMQNADVQ TQLDQTVERG NAILRRFEKT YAGQKLN
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