| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5504 |
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| Symbol | ugpC |
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| ID | 7381421 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 499411 |
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| End bp | 500556 |
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| Gene Length | 1146 bp |
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| Protein Length | 381 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649093 |
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| Product | glycerol-3-phosphate transporter ATP-binding subunit |
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| Protein accession | YP_002547330 |
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| Protein GI | 222106539 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCTGATA TCGACATCCG CGCGGTGCGC AAAAGCTACG GCAAGACACC AACCCTGCAT
GGCATAGATC TGCTGTTTGG CTCAGGGGAA TTCGTGGTCA TCCTCGGCCC CTCCGGCTGC
GGAAAATCCA CTCTGCTGCG GATGATCGCC GGGCTCGAGG ACATTACCTC AGGCGAAATC
GCTATCGATG GCCGTGTCGT GAATACATTG GAACCTCGTG AGCGCGGTTG CGCCATGGTG
TTTCAGAATT ACGCGCTTTA CCCGCATATG TCGGTGGCGG GCAATATCGG CTACGCGCTG
AAAGTGGCGG GCGTTGCCAA AGCCGAGCGT GACCGGCGCA TTCTTGAGAC CGCAAAAATC
GTCGGCTTGC AGGATTATCT CGACCGTCGG CCTGCCGCCT TGTCCGGTGG CCAGCGCCAG
CGCGTCGCCA TGGCCCGCGC CATCATCCGC GAGCCGAAGG TGTTTCTGTT CGATGAACCA
CTGTCCAATC TCGACGCCAA GCTGCGCGTC ACCATGCGCG CCGAAATCCG CAAACTGCAC
CAGCGTCTGT CAGCGACATC GGTTTTCGTG ACCCATGACC AGGTCGAAGC GATGACACTT
GCCGACCGGC TGGTGGTGAT GAACCGTGGC CATGTGGAAC AGGTCGGCAA ACCACTCGAC
ATCTATCATC GTCCGGCCAC CACGTTCGTT GCCTCGTTTA TCGGCTCACC AGCCATGAAC
CTGTTCGACG CTCGCGTCGA AGTGGAAACC TCCACCATTC GCATCAGTGG TGCAGCGGTC
GAAATCGATC CGGTCGTCGC TCATGCGCTG AGAGGGCGAG ATGTAATTGT CGGCATCCGC
CCGGAACAAT GCCGTCTTGC CAGCCACGGC CAGGGTGTCC CGGCACTCAT CGAATTCGTG
GAGGAGCTCG GTGTTGGTCG CGTCGTCCAT TGCGAATTGG CTGGCCAGCC CTTTGCCATT
GCCGTTCCCG AAGAAGCGCA GGTGACAGCC GGTGACACGA TCGGGCTGTT GCTGCCGCAG
CAGCAATTGC ACTTCTTTGA CGCCGAGAGC CAGAAGCGGA TCGACTTTTC TCCCATGGCG
GGCGCGGCAA ACAGCCTCGC CAACAGCCAG ATACCATCGC ATCAACCCAC TGGAGTTCTT
TCATGA
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| Protein sequence | MADIDIRAVR KSYGKTPTLH GIDLLFGSGE FVVILGPSGC GKSTLLRMIA GLEDITSGEI
AIDGRVVNTL EPRERGCAMV FQNYALYPHM SVAGNIGYAL KVAGVAKAER DRRILETAKI
VGLQDYLDRR PAALSGGQRQ RVAMARAIIR EPKVFLFDEP LSNLDAKLRV TMRAEIRKLH
QRLSATSVFV THDQVEAMTL ADRLVVMNRG HVEQVGKPLD IYHRPATTFV ASFIGSPAMN
LFDARVEVET STIRISGAAV EIDPVVAHAL RGRDVIVGIR PEQCRLASHG QGVPALIEFV
EELGVGRVVH CELAGQPFAI AVPEEAQVTA GDTIGLLLPQ QQLHFFDAES QKRIDFSPMA
GAANSLANSQ IPSHQPTGVL S
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