| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5498 |
|---|
| Symbol | |
|---|
| ID | 7381417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 494675 |
|---|
| End bp | 496345 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643649089 |
|---|
| Product | ABC-type anion transport system, duplicated permease component |
|---|
| Protein accession | YP_002547326 |
|---|
| Protein GI | 222106535 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG4986] ABC-type anion transport system, duplicated permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.775404 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | CTGATGGCGC TGCTGTTGAT CATCGGCGTC ATCGTGCTGT TTGCCTATGG TGAGCGGGTG
ACGACAATTC CGCTGTCGGC GCTTGATGCC GCTCCGCTGT CGCTCGATCC CACCAATCTG
CCAATCTATG CATTGCGCAC CATTCTGCGC ATGTTGGCAG CCATCGTGTT TTCGCTGATC
TTCACCCTGA TCTACGCCTC GGTTGCCGCC AAAAGCCGGC GTGCGGAAAT GGTGATGATC
CCGGTCCTCG ATATCCTCCA ATCGGTGCCG ATTCTCGGCT TTCTGACGTT TACCGTCACT
TTTTTCCTCA ACCTGTTTCC AGGACGGGTG ATCGGTGCGG AACTGGCGGC GGTGTTTGCG
ATTTTCACCA GCCAGGCCTG GAACATGACC TTCAGCCTCT ATCAGTCGAT GCGCAGCCAG
CCGAAGGACC TGGAAGAAGC CACCCGCAGC TTCCAGCTGA GTGGCTGGCA GCGCTTCTGG
CGGCTTGACG TTCCCTTCGC CATGCCCGGC CTGGTCTGGA ATACGATGAT GTCGATGTCC
GGCGGCTGGT TCTTCGTCGT CGCCTCTGAG GCCATCACCG TGGGCAATAC CACGGTTACT
CTGCCGGGCA TCGGTTCCTA TGTGGCGCTG GCCATCAAGC AACAGGACAT TCTGGCGGTC
TTCTATGCCG TCATCGCCAT GCTCGCCGTC ATCCTTCTCT ATGACCAGTT GATGTTTCGT
CCGCTGGTGG CATGGGCCGA CAAGTTCCGC TTCGAGACCA CCGCCTCAGG CGTGGCTCCC
AGTTCCTGGA TGCTGGACCT GCTGCGCAAG GCCCGTGTTA CCCGCCTGCT GCTGGCACCT
CTGAACTGGG TGGCCCGTCA ACTCTGGACA TTACGCCTCC CCAAACTGCG GAGCACCGGT
TCAAAAACTG CCAGCCCTGC CAACTCGCGT GTCATCGACT GGATCTGGAT TGCCATCATT
GCCTGTGCAG CAGCTTGGGC CGCCTATATC AGCTTCGATT ACCTGCGGGC CAGCATCGGC
TGGTCGGAAA TCCCGACCGT TATCCTCTAT GGCTCCATCA CCCTGCTGCG CGTCATTGTG
CTGATGGCCA TCGCAACCGT GGTCTGGGTG CCGGTCGGAG TGTGGATCGG CCTGCGTCCG
AAGCTCTCGG AAAAAGTCCA GCCGCTTGCG CAATTTCTGG CGGCCTTCCC CGCCAATATC
GCCTTTCCGG TGTTCGTGGT GGTGATCGTG CATTTCGGTC TCAATGCCGA TATCTGGCTG
AGCCCGCTGA TGATCCTCGG GACCCAATGG TACATCCTGT TCAATGTGAT CGCCGGTGCC
AGCGCCTTTC CAAGCGATCT CAAGGAGGCC GCCCGCAGTT TCCACATCAC CGGCTGGCGC
TGGTGGTTCA AGGTCATCCT GCCCGGTATC TTTCCCTATT ACATCACCGG GGCCATCACG
GCTTCGGGTG GGTCCTGGAA TGCCAGCATC GTCGCAGAAG TGGCAAGCTG GGGCGATACC
CAACTGACCA CCCCGGGCCT TGGCTCCTAC ATCGCCAATG CGACAACGGC AGGCGATTTC
CCACGGGTCG TGCTCGGTAT CATCGTCATG TGTACCTTCG TGACGCTGTT CAACCGGCTG
GTCTGGCGTC CGCTCTATGC CTATGGCGAA AGCCGCCTGC GCCTGGGCTG A
|
|---|
| Protein sequence | MMALLLIIGV IVLFAYGERV TTIPLSALDA APLSLDPTNL PIYALRTILR MLAAIVFSLI
FTLIYASVAA KSRRAEMVMI PVLDILQSVP ILGFLTFTVT FFLNLFPGRV IGAELAAVFA
IFTSQAWNMT FSLYQSMRSQ PKDLEEATRS FQLSGWQRFW RLDVPFAMPG LVWNTMMSMS
GGWFFVVASE AITVGNTTVT LPGIGSYVAL AIKQQDILAV FYAVIAMLAV ILLYDQLMFR
PLVAWADKFR FETTASGVAP SSWMLDLLRK ARVTRLLLAP LNWVARQLWT LRLPKLRSTG
SKTASPANSR VIDWIWIAII ACAAAWAAYI SFDYLRASIG WSEIPTVILY GSITLLRVIV
LMAIATVVWV PVGVWIGLRP KLSEKVQPLA QFLAAFPANI AFPVFVVVIV HFGLNADIWL
SPLMILGTQW YILFNVIAGA SAFPSDLKEA ARSFHITGWR WWFKVILPGI FPYYITGAIT
ASGGSWNASI VAEVASWGDT QLTTPGLGSY IANATTAGDF PRVVLGIIVM CTFVTLFNRL
VWRPLYAYGE SRLRLG
|
|---|
| |