| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5485 |
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| Symbol | |
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| ID | 7381405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 482978 |
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| End bp | 483934 |
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| Gene Length | 957 bp |
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| Protein Length | 318 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649077 |
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| Product | transcriptional regulator LysR family |
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| Protein accession | YP_002547314 |
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| Protein GI | 222106523 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.781611 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGCTTCA AGAATCTGGA CCTTAATCTG CTGGTGGCGC TCGACACGCT GATCAGGGTT
CGCAATGTCA GCCGGGCGGC AGAGGAAATG TTCATCACCC AATCGGCGAT GAGCAATGCC
CTTGGGCGTC TGCGCGATTA CTTCGATGAT CCACTGCTGA TTCAGGTCGG GCGATCCATG
GAATTATCCC CCCTCGCCGC CTCATTGGAG CTGCCCTTGC GCGACATTAT CGTGCGCATC
GAAGCGGCTG TTGTGTCAAC ACCGTCCTTC ATTCCCCATG AATCGACACG CAGTATCAAC
CTCATCGTGT CTGACTATAC GCTCAATACG ATCATGCCGC CGTTTCTTCG GCAGGTGACC
GCGCTGGCCC CGGGTGTGCA AATCCATTTC CAACCACAAC AAAACTATCC CCATCTCCTT
CTCGAGCGCG GGGAAGCGGA TCTATTGGTG GCGCCAAGCG ACTTTTGCTC GACCAATCAT
CCATCGGAAC CTTTTCTGGA AGACCAGATC TGTTGTGTGG TGGATGTGAA CGGGCCGCTG
GCCGAAGGGC CTATGACAGA AAAGGATTTT CTTGAGGCCG GTCATGTGGT GATGCAGCCG
CCCAATGGCG GCGAGACCTT TGCCCAACGC GCCTGCGACA GGCTCGGCCT GAAGATCAAG
GTGGAGGCTT CAACCTTTTC CTTTTCATCC CTGCCCTTCC TTATCCGTGG CTCAAAACGC
ATTGCCATGG TTCAACGCAG CCTGGCGGAA TGCATGCTCA ATCTGGGCGG TATCCGCATC
ATGGACCCGC CTTTCCCTCT GCCACCATTA CTACAGTGCC TGCAATGGCA CAGCTATCGC
ACCCGCGATC CCGCACTGGT CTGGTTCCGA TCCCAGATGC ACGAGGCAGC AGCGAGAGTT
CGTCAGGAAA AAATGGAGCC CGATCGGCAT AAGGAACATG ACATCGTTTC CGGCTGA
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| Protein sequence | MRFKNLDLNL LVALDTLIRV RNVSRAAEEM FITQSAMSNA LGRLRDYFDD PLLIQVGRSM
ELSPLAASLE LPLRDIIVRI EAAVVSTPSF IPHESTRSIN LIVSDYTLNT IMPPFLRQVT
ALAPGVQIHF QPQQNYPHLL LERGEADLLV APSDFCSTNH PSEPFLEDQI CCVVDVNGPL
AEGPMTEKDF LEAGHVVMQP PNGGETFAQR ACDRLGLKIK VEASTFSFSS LPFLIRGSKR
IAMVQRSLAE CMLNLGGIRI MDPPFPLPPL LQCLQWHSYR TRDPALVWFR SQMHEAAARV
RQEKMEPDRH KEHDIVSG
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