| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5483 |
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| Symbol | mexE |
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| ID | 7381403 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 478324 |
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| End bp | 479514 |
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| Gene Length | 1191 bp |
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| Protein Length | 396 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643649075 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002547312 |
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| Protein GI | 222106521 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0155996 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCCA GAAAACAACG CTGGGCCCTT ATGGGCGCCG GCCTGGGCCT TGTTGTGTCC
ATTTCAGCCG TATCCGTGGT TCTTCAATTG CCGATGAGTG CTGCTGCAAC GGCGGCCTCG
GCGGCCGCAC CGGCTCCTGC CGTGCCGGTC ACGGTTTCCA AGGTTTCCAG CCGGAATTTC
ACCCATTGGG AGCTGTTTTC CGGCCGTCTC GAGGCCGTTG AACGGGTCGA TGTGCGGCCA
CGGGTCGGCG GAGCCATCCA ATCCGTCCAT TTTCGTGAGG GCGCGTTGGT CAAGGCAGGC
GATTTGCTGT TCACTATCGA TCCCGCTCCT TATCAGGCCG CTGTCGATCA GGCGGAAGGC
CAGTTCGCTT CAGCCGAAGC CAAAGTCGAT CTTGCCAGGA TCGAATTGGA TCGCGGCTTG
AAACTATCGG GCAACAGCAC GATTTCGCAA AGCGATATGG ATCAGCGCCG CAATAGCTTT
ACCCAGGCTC AAGCTGCCAT GGGAACCGCC AGAGCCCAGC TGCAATCGGC TCAATTGGAG
CTGGATTATA CCCAGGTGCG CGCCCCGGTA TCCGGTCGCG TTGGTAAGCT TGAGGTTACA
GCTGGCAATC TGGTGGCCTC GGGGTCGTCT TCTTCCGTCT TGACCACACT GGTGTCTGTC
GATCCGATCT ATGCCAGCTT CAATGTCAGC GAGCAGTTGG TGGCCAAGGC TCTGTCGCAG
CTCCCACAAA CTGGAGCCGC CTTGGCCGAC ATCGACCGTA TCCCTGTCGA AATCGGCACG
TTGGCCGATG ACGGCACGCC GATCAAAGGC AAGCTGCAAT TGATCAATAA CCAGGTCGAT
GCGGCCAGCG GGACGATTGG GGTGCGGGCC GTGTTCGACA ATCCGGGCGG CAGGCTTATT
CCTGGCCAGT TTGTGCGGGT GCGCATGGGA CAACCAGTGC CGGAAAACAA GATCCTGGTC
AGCGAACGGG CGATTGGCAC CGATCAGGAC AAGAAATTCG TTTTCGTTGT CGATGGCGAT
AACAAGGTCA ATTACCGCCA GATCCAGCTG GGCGCCGTGG CCGAAGGCCA GCGTGTGGTG
GAAAGCGGGC TTACTGCTGG CGATACGATC GTCGTCAACG GCCTGCAACG CATCAAACCG
GGCGCAGTGG TTGTGCCGCA GCCGGAAGAA AAGCTCGCGG CGTCGAAGTA A
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| Protein sequence | MSSRKQRWAL MGAGLGLVVS ISAVSVVLQL PMSAAATAAS AAAPAPAVPV TVSKVSSRNF
THWELFSGRL EAVERVDVRP RVGGAIQSVH FREGALVKAG DLLFTIDPAP YQAAVDQAEG
QFASAEAKVD LARIELDRGL KLSGNSTISQ SDMDQRRNSF TQAQAAMGTA RAQLQSAQLE
LDYTQVRAPV SGRVGKLEVT AGNLVASGSS SSVLTTLVSV DPIYASFNVS EQLVAKALSQ
LPQTGAALAD IDRIPVEIGT LADDGTPIKG KLQLINNQVD AASGTIGVRA VFDNPGGRLI
PGQFVRVRMG QPVPENKILV SERAIGTDQD KKFVFVVDGD NKVNYRQIQL GAVAEGQRVV
ESGLTAGDTI VVNGLQRIKP GAVVVPQPEE KLAASK
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