| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5472 |
|---|
| Symbol | ssuD |
|---|
| ID | 7381562 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 471907 |
|---|
| End bp | 473097 |
|---|
| Gene Length | 1191 bp |
|---|
| Protein Length | 396 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643649069 |
|---|
| Product | sulfonate monooxygenase |
|---|
| Protein accession | YP_002547306 |
|---|
| Protein GI | 222106515 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2141] Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases |
|---|
| TIGRFAM ID | [TIGR03565] alkanesulfonate monooxygenase, FMNH(2)-dependent |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAAA CGTCCAATGC GCAAAATGCG CGGCCCATCG ATTTTCTCTG GTTCATCCCC
ACGTCGGGTG ACGGCACCTA TCTCGGCTCC AACGATCTGA CCCGCCCGGT CGATCACGGC
TATCTGCGTG AGATTGCCAG CGCTGTCGAC CGGCTCGGCT ATTACGGCGT ATTGCTGCCA
ACGGGGGTCG CCTGTGAGGA ATCCTTCGTC ACGGCGGCGT CGTTGGCTGC CCATACGCAG
AAACTGAAAT TTCTGGTCGC CATTCGCCCC GGCACGGCGT CGCCCGCCTA TTACGCGCGG
TTGGCGGTCG CCCTGGACCG GGTCTCGAAT GGTCGCACGC TGCTGAATAT CGTTGTCGGC
GGCAGCCCGA CGGAATTGGC GGGCGATGGT ATTTTCGTCT CCCATGACGA ACGCTATGCC
CATGCCGACG AGTTTTTCAC CGTCTGGGAA GATCTTCTGA GCAAGGGCCA TGCCGACCTG
AATGGCAAGT ATATTCGCGC TGAGGGGGCG CGCCTGGGCT TTCCGCCGGT ACAATCGCCG
CGTCCGCCGC TCTATTTCGG CGGCTCCTCG GACGCCGGGA TCGACTTTGC CGCCCGTCGC
GTCGACAAAT ACCTGACCTG GGGCGAACCG CCAGCGCAGG TCAAGGAAAA GGTCGATGCC
GTACGCGCTG CCGCTGCCCG CAGCGGGCGG GATGTCTCCT TTGGCATCCG TCTGCACTTT
ATCGTCCGCG AAACCGATGA AGAGGCCTGG GCCGCCGCAG ACAAGCTGAT CTCGAAACTG
TCGGATGAAA CCATCCGCGA AACCCAGGCC CGCTTTGCCA AGGAATCCGA TTCTGTCGGC
CAACGCCGCA TGACTGAATT GCATAATGGC CGGCGCGATA AGCTGGAAGT CTCGCCCAAT
CTGTGGGCCG GGGTGGGGCT GGTGCGGGCA GGGGCCGGTA CGGCCCTCGT TGGTTCGCCG
GAAACGGTGG CGGAGCGCCT GCGGGAATAT CAGGCCATCG GCATTGATAC GGTGATCGGC
TCCGGCTATC CGCACCTGGA GGAAGCCTAC CGTGTCGCGG AACTGCTGTT TCCGAAGCTT
GGTCTGGGCA GGTCGAATGA AAACGACATT AAGCACAGCG ACTTCGCCGA TTCGAAAGTC
TTTGCCGGCG GAGGCCATTC CGGTGGTTTC CGGGTCGTTT CCGGCTCCTG A
|
|---|
| Protein sequence | MTKTSNAQNA RPIDFLWFIP TSGDGTYLGS NDLTRPVDHG YLREIASAVD RLGYYGVLLP
TGVACEESFV TAASLAAHTQ KLKFLVAIRP GTASPAYYAR LAVALDRVSN GRTLLNIVVG
GSPTELAGDG IFVSHDERYA HADEFFTVWE DLLSKGHADL NGKYIRAEGA RLGFPPVQSP
RPPLYFGGSS DAGIDFAARR VDKYLTWGEP PAQVKEKVDA VRAAAARSGR DVSFGIRLHF
IVRETDEEAW AAADKLISKL SDETIRETQA RFAKESDSVG QRRMTELHNG RRDKLEVSPN
LWAGVGLVRA GAGTALVGSP ETVAERLREY QAIGIDTVIG SGYPHLEEAY RVAELLFPKL
GLGRSNENDI KHSDFADSKV FAGGGHSGGF RVVSGS
|
|---|
| |