Gene Avi_5459 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5459 
Symbol 
ID7381551 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp456989 
End bp457657 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content56% 
IMG OID643649058 
ProductABC transporter membrane spanning protein (amino acid) 
Protein accessionYP_002547295 
Protein GI222106504 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0765] ABC-type amino acid transport system, permease component 
TIGRFAM ID[TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGTTACA CTCTCGACTT TTCGGTTGTG ATCGAGCGAC TGCCGGAATT GATCCTGGCA 
TGCCTGGCAA CCATTGGTCT TGCCATCGCC GGCATGTCCA TCGCAACCAT CATCGGCATT
TTCGGGGTTG TTGCGCGCCG GTCGCCCTCC CGCATCTTGA GAAGCGCCAC AATCGGCTTT
GTTGAGTTGA TCCGCAATAC GCCCTTCCTT GTCCAGATCT TCTTCATTTT CTTCGCTCTT
CCGCAAATCG GTGTTCGGCT CAACCCGACC GTCACGGCAA TTGTCGCTCT CGGCCTGAAC
GGCGGCGCCT ATGCCATCGA AATCATTCGC GGTGGAGTGG ATTCCATCGG CAAGGGGCAG
GTGGAGGCGG GTCTTGCGCT CGGCCTGCAC CGGGCGCAAA TCCTGCGCCA CATCATTCTC
AAGCCAGCTT TGCGGGCCGT CTACCCATCG CTCACCAGCC AGTTCGTCAT GCTGACGCTG
ACGACCTCGG TCTGCACGTC AATTGCAGCT TACGAATTAA CGTCCGTTGC CCAGAAAATC
GAAGCGGATA CGTTCCGGTC CTTCGAGGTC TATTTCTCGA TCACCCTGCT TTACCTGGTG
ATTTCCTCGC TGATGATGGG GGCTTTTGCG CTCATTTCCC GCATTTTCTT CAGTTACCCG
GTAAAGTGA
 
Protein sequence
MGYTLDFSVV IERLPELILA CLATIGLAIA GMSIATIIGI FGVVARRSPS RILRSATIGF 
VELIRNTPFL VQIFFIFFAL PQIGVRLNPT VTAIVALGLN GGAYAIEIIR GGVDSIGKGQ
VEAGLALGLH RAQILRHIIL KPALRAVYPS LTSQFVMLTL TTSVCTSIAA YELTSVAQKI
EADTFRSFEV YFSITLLYLV ISSLMMGAFA LISRIFFSYP VK