Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5459 |
Symbol | |
ID | 7381551 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 456989 |
End bp | 457657 |
Gene Length | 669 bp |
Protein Length | 222 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643649058 |
Product | ABC transporter membrane spanning protein (amino acid) |
Protein accession | YP_002547295 |
Protein GI | 222106504 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTTACA CTCTCGACTT TTCGGTTGTG ATCGAGCGAC TGCCGGAATT GATCCTGGCA TGCCTGGCAA CCATTGGTCT TGCCATCGCC GGCATGTCCA TCGCAACCAT CATCGGCATT TTCGGGGTTG TTGCGCGCCG GTCGCCCTCC CGCATCTTGA GAAGCGCCAC AATCGGCTTT GTTGAGTTGA TCCGCAATAC GCCCTTCCTT GTCCAGATCT TCTTCATTTT CTTCGCTCTT CCGCAAATCG GTGTTCGGCT CAACCCGACC GTCACGGCAA TTGTCGCTCT CGGCCTGAAC GGCGGCGCCT ATGCCATCGA AATCATTCGC GGTGGAGTGG ATTCCATCGG CAAGGGGCAG GTGGAGGCGG GTCTTGCGCT CGGCCTGCAC CGGGCGCAAA TCCTGCGCCA CATCATTCTC AAGCCAGCTT TGCGGGCCGT CTACCCATCG CTCACCAGCC AGTTCGTCAT GCTGACGCTG ACGACCTCGG TCTGCACGTC AATTGCAGCT TACGAATTAA CGTCCGTTGC CCAGAAAATC GAAGCGGATA CGTTCCGGTC CTTCGAGGTC TATTTCTCGA TCACCCTGCT TTACCTGGTG ATTTCCTCGC TGATGATGGG GGCTTTTGCG CTCATTTCCC GCATTTTCTT CAGTTACCCG GTAAAGTGA
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Protein sequence | MGYTLDFSVV IERLPELILA CLATIGLAIA GMSIATIIGI FGVVARRSPS RILRSATIGF VELIRNTPFL VQIFFIFFAL PQIGVRLNPT VTAIVALGLN GGAYAIEIIR GGVDSIGKGQ VEAGLALGLH RAQILRHIIL KPALRAVYPS LTSQFVMLTL TTSVCTSIAA YELTSVAQKI EADTFRSFEV YFSITLLYLV ISSLMMGAFA LISRIFFSYP VK
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