| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5458 |
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| Symbol | |
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| ID | 7381550 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 456328 |
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| End bp | 456978 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643649057 |
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| Product | ABC transporter membrane spanning protein (amino acid) |
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| Protein accession | YP_002547294 |
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| Protein GI | 222106503 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTTCTA TCGGACCCAA TGAACTGTTT TTCCTGCTGC AAGGTTTGAA ATGGACGCTG
GCGTTGACCG CCATCGGCTT TGTCGGCGGC GGATTCTTTG GCCTTTGCGT CGCTTTGGCC
CGGGTGGCCG ATAGCGCAGC TCTGCGCAAG GCGACCGCAG GCTATATCGC CGTCTTCCAA
GGCACGCCGC TGCTGATGCA GCTCTTCGTC GTCTATTACG GCGTTGCGTT GCTCGGTCTG
GACGTGGATG CCTGGATCGC CGTCGCCATT GCCTTCACCC TGCATGCCAG CGCCTTCCTG
GGCGATATCT GGCGCGGCGG CATTCAGGCC GTTCCCAAGG GGCAGACGGA AGCCGCCAAG
GCGCTCGGCC TGCATTACGG ATCGATCATG AAGGACGTGG TGCTGCCGCA GGCTTTCAAA
GTCTCCCTGC CCGCCACCAT CGGCTTTCTG GTACAATTGA TCAAAGGGAC CTCGCTTGCC
GCCATTGTCG GCTTCGTGGA ACTGTCACGG GCGGGGCAGA TCGTCTCCAA CCAGACATTC
CGGCCGCTGA CGGTCTTTGC CATCGTCGGC ATCATCTATT TCCTGATTTG CTGGCCGCTT
TCACTCTGGG GCGCCAGAAA AGAGAAACGG CTGCAAGCCG CCGCCCGGTA A
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| Protein sequence | MASIGPNELF FLLQGLKWTL ALTAIGFVGG GFFGLCVALA RVADSAALRK ATAGYIAVFQ
GTPLLMQLFV VYYGVALLGL DVDAWIAVAI AFTLHASAFL GDIWRGGIQA VPKGQTEAAK
ALGLHYGSIM KDVVLPQAFK VSLPATIGFL VQLIKGTSLA AIVGFVELSR AGQIVSNQTF
RPLTVFAIVG IIYFLICWPL SLWGARKEKR LQAAAR
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