| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5436 |
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| Symbol | pcaI |
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| ID | 7381532 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 437682 |
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| End bp | 438389 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643649039 |
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| Product | 3-oxoadipate CoA-transferase subunit A |
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| Protein accession | YP_002547276 |
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| Protein GI | 222106485 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1788] Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit |
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| TIGRFAM ID | [TIGR02429] 3-oxoacid CoA-transferase, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAGAAAA TATATGGTGA CGCAAGTGCG GCCTTAGACG GATTGTTGTT CGATGGCATG
ACGATTTGCG CCGGTGGTTT CGGGCTTTGC GGCATTCCCG AACGCCTGAT TGATGCGATT
GTCGCATCCG GGGTCAAGGA TTTAACGATT GCCTCCAACA ATGCTGGCGT TGATGGGCAT
GGGCTTGGAA AACTTCTGCG CACCCGCCAG GTCAAAAAGA TGATTTCCTC CTATGTCGGT
GAAAACAAGG AATTCGAGCG GCAATTTCTG AGCGGCGAAC TGGAAGTCGA ATTTTGTCCG
CAGGGAACGC TGGCCGAGCG CATGCGGGCT GGCGGTGCCG GTATTCCCGG CTTCTATACG
CGAACCGGCG TCGGCACTCA GGTGGCCGAG GGCAAGGAAA CGCATATTTT CGATGGCGAA
GTCTATCTGC TGGAGCGCGG CATCCGGGCC GATCTGTCGA TCATCAAGGG ATGGCGCGCC
GATGAGGCTG GCAATCTGAT GTTCCGCAAG ACAGCCCGCA ATTTCAATGC GCCTGCGGCA
ACATCCGGCA AGATCTGTGT CGCGGAGGTC GAGGAGATCG TGCCGGTCGG AAGTCTTGAT
CCCGATGCCA TCCATCTTCC CGGCATTTAT GTCCGGCGGA TGATCAATGG TTCGCCTTAT
GACAAGAAGA TCGAATTCCG CACCGTTACA GTAAGAGGAG CAGCCTAA
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| Protein sequence | MKKIYGDASA ALDGLLFDGM TICAGGFGLC GIPERLIDAI VASGVKDLTI ASNNAGVDGH
GLGKLLRTRQ VKKMISSYVG ENKEFERQFL SGELEVEFCP QGTLAERMRA GGAGIPGFYT
RTGVGTQVAE GKETHIFDGE VYLLERGIRA DLSIIKGWRA DEAGNLMFRK TARNFNAPAA
TSGKICVAEV EEIVPVGSLD PDAIHLPGIY VRRMINGSPY DKKIEFRTVT VRGAA
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