| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5433 |
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| Symbol | |
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| ID | 7381529 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 432376 |
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| End bp | 435522 |
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| Gene Length | 3147 bp |
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| Protein Length | 1048 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 643649036 |
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| Product | dehydrogenase |
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| Protein accession | YP_002547273 |
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| Protein GI | 222106482 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1319] Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
[COG1529] Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs |
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| TIGRFAM ID | [TIGR03196] xanthine dehydrogenase D subunit
[TIGR03199] xanthine dehydrogenase C subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAGGTGC TGGCCCCGGA GACGCTGGAA CTGGCCATCG CGGAGGCGCA GCAGCCGGGC
GCGCGCATCG TCGCCGGAGC AACGGCGTTG CAACTGGAAT GGGCGAAGGG TCTGGCGAAG
CCGGACCGGA TGATCAGTCT TGCAGAGCTA TCCCCGGCAC TGTCGGGCAT TGCGCAGGTC
GGTGGGCATA TCCGTATTGG TGCAATGACA CGCCTTGCCG ATCTCCTGGC CTCGCACGAG
ATTGCTGCCG CCCTGCCATT GTTGCATTCT GCCGTAAAAC TGGTGGCCAG TCCTGGGGTG
CGCACTCTGG CGACCCTTGG CGGCAATATC GCCGGGCGCA CCGGCTGCCT CTTGCCAGCC
CTCCTCGTGC TCGACGCTGT CCTGGAATTT GCCGCCCTGC CTGACTGTAT CACGGTTTCC
GTAGCGGACT GGCTGGCGGC CCCGGCGCAG CATGGCGCAA TCCTCACGGC CATCCTGATT
GCGCCGCAAG GGGCCGGGGA GCGCTTCGTT TTTCGCAAGA TCGGCTTAAG AGCGGCCTTC
AGCCCGAGCG TCATCAACGT CGCTGGCCGC CTTCGGGCGG GGCAGAGCCG TGTCGATGCG
GCGCGGTTTG CTGTCGGCGG CGGCATCGTG CCGCCCGCCC GCCTTGATGA TGCCGAAGCG
CTTGCAGCTG GGGCTGCCTT GGACGGGATC GATTGGGTCG GGGTTCATAA CGCCTTGATG
GAGACGATCC AGGCCCCGGG CGATGGATTT CGCTCCGGTG CCTATCGGCG CTTGATTGCC
GCGAATATGC TGTGTTTCGG GCTTGGTGGA TTTCTGCCGG GTCGTGCGCC ATCCGCTCCC
GTCGCACAGC CCATTGCCTT TGCCCGCCCG CCCGAGGGTG AACTGGCGCT CGACCGCCTG
CGGATGCCAG ATCGCTGGCA TATTCGTCCG GATGTGGAGC AGAAGATCCG GGGCGAACTG
GCCTATCTGA CCGATTATCG GAAGGTGGGC ATGCTGGTCG GCCGCATCCT GCGGGCCGGA
ATTGCCCATG CGCGTATCCT GTCCATCGAC ACAGTGGCAG CAGAAACACT GCCGGGTGTT
GTCGCTGTCG TCACGCATCG TGATGTGCCG GGGCTGAATG CTTTCGGCAT CGTGGTGCGG
GACCAACCGG CGCTCTGCTT CGACACGGTG CGCCATCGTG GCGATCCGGT CGCGGCGGTG
GCGGCAATCG ATGAAGAGAC GGCGGAAAAG GCGCTGGCGC TGATCGACGT CCGCTACGCG
CCGCTGCCTG TAATAGATGA TATGGAAGCG GCTCTGGAGC CGCAGGCGGA ACAGGTGCAT
GAAAACGGCA ATCTTCAGCG GGAAATTCTC TTTACCCGTG GCGATAGTAT CCAGGGTTTC
GCCAAGGCCG ATCATGTCGT CGAAGAAACC TATATCACGC CCCGCCAGAT GCATGGCTTC
ATGGAGACCG AGGGTGGCTA TGCCTTTGTC GAGCCGGATG GGCGGCTGAA CATGTGTGCT
GGCGGCCAGC ATGGCGGGCG TGACCGGCTG CAATTGTCGC GTATCCTTGG CTTGGACGAA
GACGATATCC GGGTGGTGAC GTCGCCGACC GGCGGTGCTT TCGGCGGCAA GGACGAGCTT
TCTGTTCAGC CAGCGCTGGC GCTTCTGGCG CTGAAGGCAA AGCGGCCTGT CAGGCTACAT
TTGTCACGGG CGGAGTCCAT GCTTGCCGGT CAAAAGCGCC ACCCGATGAA GATCCGCATG
AAAACCGCCT GCGACGCGCA AGGTGTTTTG CTGGCCCAGC AGGTCGATCT GGTGGCGGAT
GCGGGGGCTT ACGCTTCGCT TGGCCCGAGC GTTCTGGAAA CGGCGCTGGA ACATGCCATC
GGCCCTTATG TGGTGGGCAA TATCACCACG CGGGGCCGTC TCGCCTATAC CAATAACGGA
CTTTGCGGCG CTTTTCGCGG GTTTGGCGCC AATCAGATGA CATTTGCCGT CGAGTGTCAG
ATGGACAGGC TGGCAGCTCT TTGCGGCCTC TCGCCTTTGG AGATCCGCAG GCGCAATCTG
CGACAGCCAG GCTCTCCCGG CACTTTAGGG CAGGTCGTAT CGACCAGTGA ACGATTGGAA
GACATGTTGG TCGCTGCCGG GGCCTCCGTG CTGTGGCGCA AGCCGCAAGG ACTCGCTGCC
GAGGGCGAGT GGATGATAGG CACCGGCATG GCGCTGAATT ATCAGGGCAA TGGTCTCGGA
TCGATCATTC CTGATCCCGC AGCGGGTCGG CTGGCGTTGA CCAAGCAGGG TCTGATCGAA
GGTGCATTCG GGCTGGACGA AATGGGGCAG GGGCTTTTGC CGGCAATCTG CGCGGCCATT
TCCGCAGAAT TAGGTTGCGC GCGCCAAGAT GTGCTCCCGC TTGTCGGAGA TACATTGCTG
GCACCGGATT CCGGTTCCAC CACCGCCTCG CGTGGCAGCC ATGTCGTTTG GGCCTCGGTT
CGGCTGGCCG CTCCTGAATT TCGCACGCAG ATGTGCCGTG CGGCGGCAGG ATTGCTTGGC
TGCGACCCTG AACGGCTCGT TCTGGTGCCC GGCGGTTTCG CGGAGCCCGG CAACCATAGC
GGCACAATTT TGCTGTCCTA TGCGGATCTG GCCGCCGCCT TGCCGGAGAA GGATTTGCCA
AGTGTGACGG TGAGGTTTGA TTTTCCAAAG ACCGATTATA CGAATGCCAA TGCCCGCTAT
ATCTTTGCCT TTGGCGCATC GCTGGCGCGT GTCGCCGTCA GCCGGGTGAC GGGAGAAGTG
CGGGTGCTTG ATCTTCACCA GCATTCTGCT GCCGGACCGA TCATCGATCT TGCCACCTAT
CTCGGTCAAT TGGAGGGTGG AGCGGTGCAA GGGCTGGGCT TCACGCTAAC GGAGGATTGC
CCGATGCAGG AGGCCGCGTA TCTGACCGGC AATTTCGACA CTTATATGCT GCCCGGCATT
CAGGATGCCC CGCTCGGTCT GCATGTCTTT GCGCTTGAGG ATCTCGATCC CGGCGACGCG
CTTGGTCCGC GCGGGGTCGG CGAACTCGGC ATCGGCGCAG TCACGCCCGC AATCGCCAAT
GCTATTGCGG CTGCCACCGG CTATTGGCCA CCAGTCATGC CTGTCGCGCC GGAAACGCTT
CTCGCATATC TCTCGGTGAT GGCATGA
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| Protein sequence | MEVLAPETLE LAIAEAQQPG ARIVAGATAL QLEWAKGLAK PDRMISLAEL SPALSGIAQV
GGHIRIGAMT RLADLLASHE IAAALPLLHS AVKLVASPGV RTLATLGGNI AGRTGCLLPA
LLVLDAVLEF AALPDCITVS VADWLAAPAQ HGAILTAILI APQGAGERFV FRKIGLRAAF
SPSVINVAGR LRAGQSRVDA ARFAVGGGIV PPARLDDAEA LAAGAALDGI DWVGVHNALM
ETIQAPGDGF RSGAYRRLIA ANMLCFGLGG FLPGRAPSAP VAQPIAFARP PEGELALDRL
RMPDRWHIRP DVEQKIRGEL AYLTDYRKVG MLVGRILRAG IAHARILSID TVAAETLPGV
VAVVTHRDVP GLNAFGIVVR DQPALCFDTV RHRGDPVAAV AAIDEETAEK ALALIDVRYA
PLPVIDDMEA ALEPQAEQVH ENGNLQREIL FTRGDSIQGF AKADHVVEET YITPRQMHGF
METEGGYAFV EPDGRLNMCA GGQHGGRDRL QLSRILGLDE DDIRVVTSPT GGAFGGKDEL
SVQPALALLA LKAKRPVRLH LSRAESMLAG QKRHPMKIRM KTACDAQGVL LAQQVDLVAD
AGAYASLGPS VLETALEHAI GPYVVGNITT RGRLAYTNNG LCGAFRGFGA NQMTFAVECQ
MDRLAALCGL SPLEIRRRNL RQPGSPGTLG QVVSTSERLE DMLVAAGASV LWRKPQGLAA
EGEWMIGTGM ALNYQGNGLG SIIPDPAAGR LALTKQGLIE GAFGLDEMGQ GLLPAICAAI
SAELGCARQD VLPLVGDTLL APDSGSTTAS RGSHVVWASV RLAAPEFRTQ MCRAAAGLLG
CDPERLVLVP GGFAEPGNHS GTILLSYADL AAALPEKDLP SVTVRFDFPK TDYTNANARY
IFAFGASLAR VAVSRVTGEV RVLDLHQHSA AGPIIDLATY LGQLEGGAVQ GLGFTLTEDC
PMQEAAYLTG NFDTYMLPGI QDAPLGLHVF ALEDLDPGDA LGPRGVGELG IGAVTPAIAN
AIAAATGYWP PVMPVAPETL LAYLSVMA
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