| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5420 |
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| Symbol | |
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| ID | 7381519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 421282 |
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| End bp | 422394 |
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| Gene Length | 1113 bp |
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| Protein Length | 370 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643649027 |
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| Product | lipoprotein |
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| Protein accession | YP_002547264 |
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| Protein GI | 222106473 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1744] Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein |
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| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.406883 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCGACC TGCGCAGCCT TTCCCGTCGC GGTTTTCTCA ACATGGCGGC AGCCGGCAGC
GCCTCACTGG CGCTTCCCGG CATGGTGCGC TCTGCCTCAG CCGCCAATAC CCTGGCGGCC
ATAAAGGAAG AGGACGCCGT GATTGGCTTC GGCCATGTCG GCCCGGTGAC GGATGAAGGC
TGGACCTGGT CGCACCATCA GGGTGTTCTC GCCGTCAAGG AAAAATTCCC CAAGCTGAAG
AAGATCCTCG AGGTCGAGAA CGTTCCCTAT TCAGCGGATG CGACCCGCAC CTATCGGCAA
TTCGTGTCGG AAGGCGCGAA CATGATTTTC GATACGTCGT CTACCGGCGA CTTCCTGCAT
GACGTGGTGC GCCGCGCCAA AGACACCGCC TTCATGGAGT GCAATGGCCA TGTGACGATG
GACAATCTCG GCTGGTATTA TATGGCCCAT TGGTATCCAA CCTATGTGGT CGGCGTCGCC
GCAGGGCATC TGTCGAAAAC CGGCAAACTC GGTTACGTCG CCTCCTTCCC GGTTGCTTCG
GTCTATGCCT CGACCAACGC CTTCCTGATG GGCGCGCGCA CCGTCAACCC CAATGCCACC
TGCCAGACCA TCACCATCAA TTCCTGGTTC GATCCGCAGG CCGCCGCCCA GGCTGGCACC
GCGCTGATCG ACAATGGCTG CGATTTCCTG TTCGGCATCA TGGATGAGGC CGCCTATCTT
CAGGTCGCCG AAAAACGCGG CGTCTGGGCT GCGATGTGGA ACACCGACAT CCGCCGCTAT
GGCCCGAATT CCTACGTGTC TTCGATCATT ATCGACTTCA AGGAGTTCTA TATCGATCAG
GTCCGCAAGC GGCTGGCAGG CGAATGGTCG CCTTCGGAAA GCATCTTCGC CATGGGCGCA
GGCGTTGACC GCGATAGCTG GGGCGCCAAG GTTCCCGCCG AAGTCGGCAA GGCGGCAGAC
GATATACGCA CGAAAATCCT GGGCGGCTGG TCGCCGTTTG TCGGCGAATT GAAGGACGCC
AAGGGCGCTG TGCGGGTGGC CAAGGGCCAG AAGATGACCG AACTCGAGCT TTATAATTGG
GATTGGTCAG TGGAAGGCGT CACGGGGCTT TAA
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| Protein sequence | MIDLRSLSRR GFLNMAAAGS ASLALPGMVR SASAANTLAA IKEEDAVIGF GHVGPVTDEG
WTWSHHQGVL AVKEKFPKLK KILEVENVPY SADATRTYRQ FVSEGANMIF DTSSTGDFLH
DVVRRAKDTA FMECNGHVTM DNLGWYYMAH WYPTYVVGVA AGHLSKTGKL GYVASFPVAS
VYASTNAFLM GARTVNPNAT CQTITINSWF DPQAAAQAGT ALIDNGCDFL FGIMDEAAYL
QVAEKRGVWA AMWNTDIRRY GPNSYVSSII IDFKEFYIDQ VRKRLAGEWS PSESIFAMGA
GVDRDSWGAK VPAEVGKAAD DIRTKILGGW SPFVGELKDA KGAVRVAKGQ KMTELELYNW
DWSVEGVTGL
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