| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5416 |
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| Symbol | |
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| ID | 7381515 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 416752 |
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| End bp | 417603 |
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| Gene Length | 852 bp |
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| Protein Length | 283 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643649023 |
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| Product | vanillate O-demethylase oxygenase subunit |
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| Protein accession | YP_002547260 |
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| Protein GI | 222106469 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG4638] Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.221202 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGGCAA TCGACAAAAC AAGCCTCGAT CAATGGTATC CCATCGATAC CGAAGCGCTC
ATTCCCTATG GTACATCCGC AAACCGGCTT CTTGGCATTG ATCTCGCCGT GATCCGAACC
CAGGACGGTG ACGTGACCGT GAAGGCACAG GAAAACAACC TGCCAATCCG GCGGCGCTAC
GGCTATATAT GGACGACGCT CGGCACCCCC GACAAGGAGA TTTTCCCCAT TGAGGAAGCC
GATGAGCCGG ATCGCCGGAT GGTGCCTTGC GGTGCGGTCA CCGTGAAGGC ATCGGGCCTG
CGGATTGTCG AGAACTTTCT CGATATGGCG CATTTTCCCT TCGTCCATAC CGATATTCTC
GGCTCGGAGC CGCATACGGA AGTCGAGCAT TATAATGTGG AAATCCGCCG CGACGTCGAT
GAGGTCTGGG CGACCAATTG CCAATTCTTC CAGCCACAAG CCGCCCTTTC CGCCACGGAC
GGGTTGATGA CCCACTATAT CTACCGGGTG ATGACGCCGT TCACGACGCT GCTCTACAAG
ACCTGCCCGA ATTCCGACAG CCGATGGGAT GTGATCTGCC TGTTCGTCCA ACCCCTGGAC
CCAGATCGCT GCCGCGCCCA TCCGATCATG TATCTGATCG ACGATCAATC GACCACAGCC
TCGCTGATCC AGTTCCAGCA GCTGATTTTC CTGCAAGACC GGATCATCCT TGAAAACCAG
CGCCCGGTTC TGCTGCCAAT GGAGCCACGC TCGGAAATCC CCACCCGGGC TGACGCTACC
TCCATCGCCT ATCGCCGCTG GCTGAAGGAA AAAGGCGTGA CCTATGGAAC CTCGCTGAAG
GCCGTTGCAT GA
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| Protein sequence | MMAIDKTSLD QWYPIDTEAL IPYGTSANRL LGIDLAVIRT QDGDVTVKAQ ENNLPIRRRY
GYIWTTLGTP DKEIFPIEEA DEPDRRMVPC GAVTVKASGL RIVENFLDMA HFPFVHTDIL
GSEPHTEVEH YNVEIRRDVD EVWATNCQFF QPQAALSATD GLMTHYIYRV MTPFTTLLYK
TCPNSDSRWD VICLFVQPLD PDRCRAHPIM YLIDDQSTTA SLIQFQQLIF LQDRIILENQ
RPVLLPMEPR SEIPTRADAT SIAYRRWLKE KGVTYGTSLK AVA
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