| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5399 |
|---|
| Symbol | thuF |
|---|
| ID | 7381502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 400358 |
|---|
| End bp | 401260 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643649010 |
|---|
| Product | ABC transporter membrane spanning protein (sugar) |
|---|
| Protein accession | YP_002547247 |
|---|
| Protein GI | 222106456 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1175] ABC-type sugar transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGA TCATGTCGAG TATTGTCGAT GGGCGTGGCT TTGACTTCGG TCTTGCCGGG
GTGCCGCTGG CCTTTCTGCT GTTCATGTCG GGTCTGCCGC TGCTCTATAA TATCGTGATG
AGCTTTCAGG AGGTTGATAT GTTCAGCCTT GGAACCTTCT CCCGTCCCTT TGTCGGTTTT
CAGAACTATA TCGACTTGAT GGCGCAGCCC GAAACCCTGC CTATTTTTAT TAATACGGCG
ATTTTTGTTG TGGCATCGAT TGCCGGGCAA TTCCTTCTGG GCTTTGGTCT GGCGCTGTTT
TTCGGGGTGG GATTTCCCGG TTCTTCCTGG CTGCGCGGCC TGTTCCTGGT GTCCTGGATC
ATGCCCGGCC TCGTCGTCGG CGCGACCTGG AACTGGATCC TCTCAGGTGA TTTCGGCGTG
TTCAATTACA TGCTGCGCGA AACCGGGCTG ATCAGCGCCA ATATCTTCTG GCGGTCCGAT
CCTGCCTATG CGCTGTGGGC GGTGATTATC GCCAATATCT GGCTTGGCAC GTCCTTTAAC
ATGATCCTGC TGTCGGTCGG GCTATCAGGC ATCCCCAAGG ATCTCCATGA AGCGGCGCAA
CTGGATGGCG CCACCGTGCT GCAACGGTTC TACACCATCA CCCTGCCGAT GATGCGCTCG
TCTATCGGTG CGCTCGTGTC GCTGGGGTTG ATCTTTACCT TGCAGCAATT TGATCTGTTT
GCCGCCATTA CCTCCGGCGG ACCGGCCAAT GCCTCGAATG TGGCGCAATA TTGGGCCTGG
GACCTGTCTT TCCGGCAATA TGACTTCGCC AAGGGTGCGA CCGTGTCCGT GATCATGACC
GTTTTCGTGC TTCTGGCATC GCTCGTCTAT GTCCGCTCTA CACGTCATGA GGTGCGAGGA
TGA
|
|---|
| Protein sequence | MKRIMSSIVD GRGFDFGLAG VPLAFLLFMS GLPLLYNIVM SFQEVDMFSL GTFSRPFVGF
QNYIDLMAQP ETLPIFINTA IFVVASIAGQ FLLGFGLALF FGVGFPGSSW LRGLFLVSWI
MPGLVVGATW NWILSGDFGV FNYMLRETGL ISANIFWRSD PAYALWAVII ANIWLGTSFN
MILLSVGLSG IPKDLHEAAQ LDGATVLQRF YTITLPMMRS SIGALVSLGL IFTLQQFDLF
AAITSGGPAN ASNVAQYWAW DLSFRQYDFA KGATVSVIMT VFVLLASLVY VRSTRHEVRG
|
|---|
| |