| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5383 |
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| Symbol | |
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| ID | 7381489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 384907 |
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| End bp | 387261 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648997 |
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| Product | Signal transduction histidine kinase |
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| Protein accession | YP_002547234 |
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| Protein GI | 222106443 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.626951 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGGATA TCCCGGCAAA GACTGTGGTG TCCGCCCACA GTCGCTTTCG CTTTCTCAAC
CAGCCTTTGG CCGTCAAAGG CCTGATCGTA ATCGCATTGC CTCTGGCCTG TCTTCTCATT
GCCCTCGGCT CCGTCTTTCT CGCTGACCGT GAAAGCCGAA AGGCAGAAAA TTACGTGCGC
GTCACCTTCG CCATTCAACA GGACATTCTG GAGCTGCACG CTTTGCTGGC CGAAGGTGCC
TCCGGCGTGC GGGGATATCT TCTCACCCGC GACGAAACCT TCCTGGCCCC CTACAAGAAA
GCCGTAACGG AATTGCCGGC GGTGTTTGCC GCCATGCGGC CACTGATCAT CGATGCGGAA
CAACTTGAGC GGCTGAACCG GATGGAGCCT CTGGTTGACA AAAAGCTGAA GGGTCTTGCC
TCCCTGATGC AAGGTTCGGT TTCGAATAAC CAGATTCCCG AAGCTTTGCG GCAGACATTG
ATTGCCAACA AGGCCTTTCT GGACGAGTTA CGCCTTCAGA TTGCCGAAAT GCGACTGAGG
GAAGACGCGC TTCTGGCGCA ACGAACGGCC AAGGCCGATG AAATCCGGGC GCTGTCGCAA
AGAATTACCC TATTGGGCGC GATCGCTGGT GTCATCGGAT GCATCGGTGC CATCGTCTTG
ATGTCAAAAG GCATTGTCCG GCGGGTCGAT AGGCTGAAAC AGGCCGCCAG CCGCCTCGCC
CAGGGCCAAA GCCTGAGACT GGCAGAACAT GCAACGGACG AAATTGGCGA ATTGTCGAGC
GCGCTCGAAG AGGCAAGCCG CCTGCTGACG GCGCGCGAAG AGGCCCTGCG GGAAAGCGAG
GAACGCTTCC GGCTGCTCGT CGATGGCGTC CATGACTATG GTATTTTCGG GTTGGATGCA
GACGGCACTG TGGTGAGCTG GAATGCCGGT GCAGAGCGTA TCAAAGGCTA TCGTGCAGAC
GAAATCATCG GTCAGCACTT TTCTCGCTTC TATCCTCTCG AGCATCGAGA CACACGGCCG
CTTCAGGAAA TGGCGCAAGC CGCCGCCTTT GGCCGCGTCG AAGACGAGGG ATGGCGGTTG
CGCAAGGATG GCAGCCGCTT CTGGGCCAAT GTGGTGATGA CAGCCCTGCG CGATAAGCAA
GGGCAATTGC GGGGCTTTTC CAAGATCACC CGCGATGTGA CGGACCGGAA ACGAACCGAA
GAGGCCCTGT TGACCGCACG GCGTGACGCC GAACGGGCCA GCCAAGCCAA AAGCGAGTTT
CTGTCGCGCA TGAGCCATGA ATTGCGCACG CCGCTGAATT CCGTTCTGGG CTTTGCACAA
ATCCTCGATA TGGACATCGA AGATCGGGAC ATGCGCGAAA GTCTGGCGCA AATCCTCAGA
GCTGGACGGC ATCTGCTCAG TCTCATCGAT GAAGTTCTCG ATATCGCCCG GATCGAGGCG
GGCCGCATGG AACTGTTGAT CGAGCCGGTC GGATTGGACG ATATCGTGAC GGAAGCCATT
GCCCTTGCGG CTCCCTTGGC CGAACCGAAG CAATTGACGA TCAGGGTGGA GATGGAGGCA
GCGGGCCAAA CTATTGTTGC GGTGGATCGT CGCCGTTTTT TGCAAGTGCT ACTGAACCTG
CTTTCAAATG CGGTGAAATT CAACAGGGAT GGTGGTGAGA TCCGATTATC CGCTCAATTA
CTGACTAACA CCATGATCGC AATTGATATT GCCGACACGG GCTGCGGAAT TGCGGATGTG
GATAGAGACC GGCTCTTCAA GCCGTTCGAG AGGCTCGGTG CCGACCGAAA TGCAACGACC
GGCACAGGCC TTGGCCTTGC CCTGTCGGTC AATCTGATGC AGGCCATGGA TGGCGATCTT
TTCTTGACCG AGAGTGACGC GACCGGCTCG GTGTTCTCCA TCCATATTCC CGTGTCACAC
GCCCCTTACG CCGTGGCAGA GGTGGTGAAA ACAGACGAGA AACGGGCAGT GGCAAGCGGA
CCGACAGGCA AAGCCACGGT CCTTTGCATT GAGGACAACC TTGTCAATCT CAACCTGATC
GAAAACCTCG TGCGCCGCCG TTTAAAGACC AGGATCATTC CGGCCATGTT GGGTGGTCTC
GGCCTGACGC TTGCCTTTGA GCACCGTCCC GATCTTGTTT TGCTCGACGT CGATCTGCCT
GACATGAATG GCCTATCGGT GCTTGCCGCC TTGCGTTCAG ATCCTCGGAC GCAAACCACC
CCGGTCGTTG TGATAAGCGC CGATGCCACG GAAAAAACAC GCATGCTGGC GATGGAAAAA
GGCGCAACGC ATTACATGAC CAAACCGCTG GACGTACGCC GCCTGATGAA AACCCTGGAT
GAGGTTCTGA CGTGA
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| Protein sequence | MTDIPAKTVV SAHSRFRFLN QPLAVKGLIV IALPLACLLI ALGSVFLADR ESRKAENYVR
VTFAIQQDIL ELHALLAEGA SGVRGYLLTR DETFLAPYKK AVTELPAVFA AMRPLIIDAE
QLERLNRMEP LVDKKLKGLA SLMQGSVSNN QIPEALRQTL IANKAFLDEL RLQIAEMRLR
EDALLAQRTA KADEIRALSQ RITLLGAIAG VIGCIGAIVL MSKGIVRRVD RLKQAASRLA
QGQSLRLAEH ATDEIGELSS ALEEASRLLT AREEALRESE ERFRLLVDGV HDYGIFGLDA
DGTVVSWNAG AERIKGYRAD EIIGQHFSRF YPLEHRDTRP LQEMAQAAAF GRVEDEGWRL
RKDGSRFWAN VVMTALRDKQ GQLRGFSKIT RDVTDRKRTE EALLTARRDA ERASQAKSEF
LSRMSHELRT PLNSVLGFAQ ILDMDIEDRD MRESLAQILR AGRHLLSLID EVLDIARIEA
GRMELLIEPV GLDDIVTEAI ALAAPLAEPK QLTIRVEMEA AGQTIVAVDR RRFLQVLLNL
LSNAVKFNRD GGEIRLSAQL LTNTMIAIDI ADTGCGIADV DRDRLFKPFE RLGADRNATT
GTGLGLALSV NLMQAMDGDL FLTESDATGS VFSIHIPVSH APYAVAEVVK TDEKRAVASG
PTGKATVLCI EDNLVNLNLI ENLVRRRLKT RIIPAMLGGL GLTLAFEHRP DLVLLDVDLP
DMNGLSVLAA LRSDPRTQTT PVVVISADAT EKTRMLAMEK GATHYMTKPL DVRRLMKTLD
EVLT
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