| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5379 |
|---|
| Symbol | |
|---|
| ID | 7381485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 380597 |
|---|
| End bp | 381721 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 643648993 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547230 |
|---|
| Protein GI | 222106439 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3535] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGA TCATTTCCCC GAAAGACTAT TTTGACCCGA AAGACCTCTG GATTTTCGAC
CGCGATGATC TGACCTCATT GGAAATCGGC GCTGGCATTC TGGGCACAGG CGGCGGTGGC
AATCCCTATA TTGGCAAGCT GCGTGCCCGC CAGTTGCTGG ATGAGGGCTA TACGCTCTCG
GTTCTGCCAC ACCAGAAAAT CCATGATGAT GCGCTTTGCG TTTCAGTGGG CGGCATTGGT
GCGCCTGTCG TTGGTATTGA GCGCTTGCGT GAAGGCCGTG AGGGCCTGCG ATGCATCCGC
GCGCTGGAAG CGCATCTGGA TATGACCATA GACGCCATTG TCTGCGAGGA AATCGGTGGG
TCCAATTCCA TGGAGCCGCT GGTGGTGGCA GCCCTTACCG GTGTTCCTGT CATTGATTGC
GACGGCATGG GCCGAGCCTT CCCGGAAATG CAGATGACCA CGTTTTCCAT CTACGGCCAT
AGTTCCACGC CATCGGCCAT GTGCGATGTG CATGGCAATG TTGTGCTGTT TCAGCATGCG
GTATCCGAGC TTTGGCACGA GCGTATGGCG CGGGCCTGCG TGGTGGCCCA AGGGGGGGCA
TCCACATTGG CGTCCGCACC GATGACCGGG GCTTTCGTCA AGCAATTCGG CATTCCCAAT
TCCTACACGC AAGCCGTAAG CCTTGGGCAG GCAGTCAGGC TTGCGCAGAA AAACCACGAT
GACCCAATTG AAGCCATCTG CAAAAAGGAG AACGGCAAAA AGCTGTTCAC CGGTAAAATC
AGCGATTTGA AGCGCCATTT GCGCGGCGGC TTTGTGCGCG GCGAAGTGCA GCTTTCCGGC
ATTGATGCCC ACAATGGCGA AACCGGCTCG GTGCTGATCC AGAATGAAAA TCTGGTGTTC
TTCCACGACG GTGAGATGGA ATGCTGCGTG CCGGACCTGA TTCTGGTGCT GGATGTGGAT
AGCGGCGAAG CCATCACCAC CGAAATGCTG CGCTATGGCC AGCGCGTCGC CATCGTTGCC
TTGCCGTGCC ATGGGCTGCT GCGCTCACGC GAAGCACTGG ATGTGGTTGG CCCCAAAGCC
TTCGGGCTGG ATGGCATTGT CTACACCCCG ATGAAAGGAT CGTGA
|
|---|
| Protein sequence | MSAIISPKDY FDPKDLWIFD RDDLTSLEIG AGILGTGGGG NPYIGKLRAR QLLDEGYTLS
VLPHQKIHDD ALCVSVGGIG APVVGIERLR EGREGLRCIR ALEAHLDMTI DAIVCEEIGG
SNSMEPLVVA ALTGVPVIDC DGMGRAFPEM QMTTFSIYGH SSTPSAMCDV HGNVVLFQHA
VSELWHERMA RACVVAQGGA STLASAPMTG AFVKQFGIPN SYTQAVSLGQ AVRLAQKNHD
DPIEAICKKE NGKKLFTGKI SDLKRHLRGG FVRGEVQLSG IDAHNGETGS VLIQNENLVF
FHDGEMECCV PDLILVLDVD SGEAITTEML RYGQRVAIVA LPCHGLLRSR EALDVVGPKA
FGLDGIVYTP MKGS
|
|---|
| |