| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5359 |
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| Symbol | dppC |
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| ID | 7380714 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 358555 |
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| End bp | 359424 |
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| Gene Length | 870 bp |
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| Protein Length | 289 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643648975 |
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| Product | ABC transporter membrane spanning protein (dipeptide) |
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| Protein accession | YP_002547212 |
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| Protein GI | 222106421 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.632265 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCGCCA TGAGTGAGGC CGCAACTGGC CCGTCCCCCC TATCCGGCAG AGGCTGGCGC
AAACTGAAAG CCAACAAGGC AGCGTTGGTT GGCCTTGGCA TCATCCTGTT CTTTCTGGTG
GTGGCGCTGC TGGCGCCGCT GCTGCCCATC GCCGATCCCT TGGCGTCGAG CTGGTCAGCC
ATTCGCAAGG CACCGTCGCT GGCCCACCCG TTCGGCACGG ATGACCTTGG CCGCGATATT
ATGTCCCGGA TGATCTGGGG GGCGAGGGCA TCGCTTGCGG CAGGAATTTT CTCCGTGGCG
ATTGCCACCA TCCTTGGTGT TCCGCTTGGC ATCCTCTCCG GTTATTTCGG CGGCTGGATC
GATATGGTGA TTTCCCGCAT CACCGAGGCC TTCCTGGCAA TGCCTTTTCT GATCATGGCC
ATCGCTCTTG CCGCCTTTCT TGGGCCGAGC CTGACCAATG CGATGATCGC CATCGGCCTT
TCGGCGCTGC CAACCTTCAT CCGGTTGAGT CGAGGTCAGG TTTTGGCCGT CAAGACGGAA
GATTACGTGG AGGGCGCACG CTCCATTGGC CTTGGACATG TGGCAATCAT GAGCCGTTAC
ATCTTTCCCA ATATCCTGGC GCCGGTTCTG GTGCAGGCAA CACTGACGGT TGCCACTGCG
ATCATCGCCG AAGCCAGCCT GTCTTTTCTG GGTCTTGGAC AGCAGCCGCC AGCGCCCAGC
TGGGGCTCGA TGCTGAATGT CGCCAAGAAT TTCCTCAGTC AGGCACCGTG GATGGCCATT
TGGCCGGGCG GTGCGATTTT TCTCGTCGTC ATTGGGTTCA ATCTCCTGGG GGACGGGCTG
CGTGACGTTC TCGATCCGCG CTCGTCCTGA
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| Protein sequence | MTAMSEAATG PSPLSGRGWR KLKANKAALV GLGIILFFLV VALLAPLLPI ADPLASSWSA
IRKAPSLAHP FGTDDLGRDI MSRMIWGARA SLAAGIFSVA IATILGVPLG ILSGYFGGWI
DMVISRITEA FLAMPFLIMA IALAAFLGPS LTNAMIAIGL SALPTFIRLS RGQVLAVKTE
DYVEGARSIG LGHVAIMSRY IFPNILAPVL VQATLTVATA IIAEASLSFL GLGQQPPAPS
WGSMLNVAKN FLSQAPWMAI WPGGAIFLVV IGFNLLGDGL RDVLDPRSS
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