| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5352 |
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| Symbol | |
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| ID | 7380708 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 351928 |
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| End bp | 352980 |
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| Gene Length | 1053 bp |
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| Protein Length | 350 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643648969 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002547206 |
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| Protein GI | 222106415 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCCTCGA TCCGCGGCTC CATACGTGAG GACAGCATGA CCCGGCCTAT TCTGGAGATC
CGCGATCTCA CCACCCATTT CCAAACCCGA TCCGGCACCG CCCGCGCGGT CGATAAGGTC
TCGTTGTCGC TTGAAGCGGG GCAAACGCTC TGCGTTGTCG GCGAGAGCGG CTGCGGCAAA
TCGATCACCG CGCTGAGCAT CATGGGGCTG GTGCCCTATC CCGGCAAAAT CATCGGTGGC
GAAGTGCTGC TGGATGGGGC CGATCTGCGC AGCATGTCGC CGATGGACCT CAGCAAGGTG
CGCGGCAACC GGATTTCGAT GATTTTTCAG GACCCTTCCT CCTCGCTCAA TCCGGTTCAC
ACCGTGGGGC GGCAGATTGC CGAGGCTTAC CGTCTGCACA AAAACATGGG CAAGCGCGAA
GCCGAGGATG CAGCAATCGC CATGCTGAAA GCCGTCGGCA TTCCCGATCC CCAACGACGC
ATGAAGGCCT ATCCGCATGA AATGTCCGGT GGCATGGCGC AGCGGGTGAT GATTGCCATG
GCGCTGGCCT GCCAGCCGGA AGTACTGATT GCCGACGAGC CGACCACCGC GCTGGATGTG
ACCATTCAGG CGCAAATTCT GGATTTGATG CGCGATTTGC AGCGCGATTT CGGCACCGCC
ATCATTCTGA TCACCCATGA TCTCGGCGTG GTCGCCGAAA TGGCCGATCA TGTCGCGGTG
ATGTATGCGG GCCAAGTGGT AGAGCTTGCC GATGTGAGAA CCCTGTTCAA ATCGCCCAAG
CATCCCTACA CGCAAGCCTT GCTGCGCTCG GTGCCGGTGC TGGGCGAATC TCCTGATATG
CTGGAAGTCA TCGATGGTCG TGTGCCGCAA TTAACCCACT TGCCACAGGG CTGTCTGTTC
GCGCCGCGTT GCACAGCCCG GCGTGAGGCC AATGAACCGC GCTGTCTGAC CGAAGTTCCA
GCGCTGACCG AAATCCACAA GGCCCATCAC TGTCGATGCT GGCTGAACGA ACCGGCGACG
CTTGCCGGTG AACAAGAGGT TCAGCCCGCA TGA
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| Protein sequence | MPSIRGSIRE DSMTRPILEI RDLTTHFQTR SGTARAVDKV SLSLEAGQTL CVVGESGCGK
SITALSIMGL VPYPGKIIGG EVLLDGADLR SMSPMDLSKV RGNRISMIFQ DPSSSLNPVH
TVGRQIAEAY RLHKNMGKRE AEDAAIAMLK AVGIPDPQRR MKAYPHEMSG GMAQRVMIAM
ALACQPEVLI ADEPTTALDV TIQAQILDLM RDLQRDFGTA IILITHDLGV VAEMADHVAV
MYAGQVVELA DVRTLFKSPK HPYTQALLRS VPVLGESPDM LEVIDGRVPQ LTHLPQGCLF
APRCTARREA NEPRCLTEVP ALTEIHKAHH CRCWLNEPAT LAGEQEVQPA
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