| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5339 |
|---|
| Symbol | rbsB |
|---|
| ID | 7380698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 340737 |
|---|
| End bp | 341726 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643648959 |
|---|
| Product | ABC transporter substrate binding protein (ribose) |
|---|
| Protein accession | YP_002547196 |
|---|
| Protein GI | 222106405 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAACGTC GGCGTTTTCT TCAATCTGCG ACCGCGCTTG CCTTGTCCGC ACCGGCTGTT
CTGGCGGTTA CGCGTGCTCA GGCCGAAAAT AAAAAATTCA GAATTGCGCT GATTCCGGGT
CTGACGACCG ATGCGTTTTA TATCACGATG CATAAGGGCG CAGAAGCAGC AGCAGCTGCC
ATTGGCGCAC AGATTATTTT TCAAGGCGCT CCAGATTTCA ACCCTGTTAC ACAGGTCCCG
GTTCTTGATG CGGTCATTGC GAAAAAGCCG GATGCCATTC TCATCGCACC CACCGATACC
ACCCAGCTGG TGCAGCCGTT GAAAAAGGCC GCGGATGCGG GCATTCCAAT GATCACGGTC
GATACATTCA TCGGGACAGG TGACTATCAA ACGGGTGCAG GGGACGGGGA CTTTCCGTTG
TCCTATATCG CATCGGACAA TGTTCTGGGC GGCGAAATTG CAGCGCGCTC TCTGGCGTTG
GCCATTGGTG ACAAAGGCAA GGTCTATGTC TCCAACGTTA AGCCAGGAGT TTCGACAACG
GACCAGCGAG AGCAAGGGTT CAAATCCGAG ATGGCCAAAC ATCCCGGCAT TACGGTTCTC
GAAACGCAAT TCAATGACAA TGACGCCAAC AAGGCCGCAT CTCAACTCCA GGCGGTCTAC
GCCCGCAATC CAGATTTGGC CGGGGTATTT GGTGCCAATC TGTTTTCCGG GCTTGGATCG
GCGAACGGTG TCCAGCAGGC TGGCCAATCC GGTACAATCA AGGTTGTGGC TTTCGATGCG
CCAGGGTCAG TGGTGGATAA TCTGAAATCC GGCCTTATCG ATTTTGCAAT CGCCCAGCAT
CCTGCGGAAA TCGGCTATTA CGGGGTGATC TCCGCCTATG CGCACCTGAC CGGGCAGTCC
ATCCCAACCA AGATTGGGAC TGGCTTTACT GTCATCAACA AAAGCAACGT GACTGATCCA
GCCGTCGCTC GGTTCATCTA CGCTGAATAG
|
|---|
| Protein sequence | MERRRFLQSA TALALSAPAV LAVTRAQAEN KKFRIALIPG LTTDAFYITM HKGAEAAAAA
IGAQIIFQGA PDFNPVTQVP VLDAVIAKKP DAILIAPTDT TQLVQPLKKA ADAGIPMITV
DTFIGTGDYQ TGAGDGDFPL SYIASDNVLG GEIAARSLAL AIGDKGKVYV SNVKPGVSTT
DQREQGFKSE MAKHPGITVL ETQFNDNDAN KAASQLQAVY ARNPDLAGVF GANLFSGLGS
ANGVQQAGQS GTIKVVAFDA PGSVVDNLKS GLIDFAIAQH PAEIGYYGVI SAYAHLTGQS
IPTKIGTGFT VINKSNVTDP AVARFIYAE
|
|---|
| |