| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5314 |
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| Symbol | |
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| ID | 7380677 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 314409 |
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| End bp | 315788 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643648939 |
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| Product | Carbohydrate-selective porin |
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| Protein accession | YP_002547176 |
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| Protein GI | 222106385 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3659] Carbohydrate-selective porin |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.385247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGAACTT TAAATCTGCT GGCAGTGCCT TTGCTGCTTG CATCCTTGCT GCCGGCCGCA
GCAGCCGATA CGGCGCTGCC GTCAAGCGAC ACACCACCTG GCGAGGGAGG CATGCCCGGT
CCGGTCTATT CCGGCCCCTT GGCCAGCGTG GGTAGAACGC TGCATGACAA CGGTATCGAC
CTTCAACTCG ATTTTGTCGA TTTCTATCAG AATGCGCCGT CTTTTGGGGC TGCGGGTGGC
TCATCAGCCA ATTACGGCAT GTTCATCTTG GGCGTTACCG GTAATCTGAC ACCGGATCTT
CGGGTCAATC TGGTTGAGAC AATCAACGCC CCGACTCAAA ATGTCGACAA TTATCTGTTT
GATCTTTCGA ATGCCTTTTT CCCTGTCCCG ATCGTGAATT CGGACACCGA TCTGACCCGT
TTCACCATTG AAGGCGACCT TTTCAACGAT CGGCTGACTG TTGAAGCGGG ACGGATGGGC
CTTAATCGCG ACTTCATGAA AAAAGGCTTC TGCGGCGGCA TTGGCTGCGT GCCCTCAACG
CCGGCAATCA CCCTCAACAT GCCAGGCGAA GCACTGTCTG TCTGGGGTGG GAGACTGGCC
TATCGACTGG ATCAAACAAC CACGCTGGGA TTTGGAGCCA TCGAGGACAA TTCTGACAAT
TGGCAGAATG GCGATGGATG GGATTGGGGA ACCGGCGATG CCAAAGGCTA TATCGCCATT
GCCAATATCA GCCATGACGA AACCTTCATG CAGAATGCCA ACCCTTTGAA ATACGAGGTC
GGCGCTTACC ACCGTTCCAC CTCCTATGAA GACGCACTTT ACAATAGCGG TTGGGGCAAC
CCGACCTTTG GAGCCAATAC AAAAATTGTT AATCATGATG GCGGAACGAG CGGCGTTTAC
GGGCAGGTTC GCAAGGTCGT GTGGAGTGAG GCGTCCGGTA GCCCGATTCC CGAAAACCTC
GCCGTCTATG GTGGCTTGTT CCATACGTTC GGCGATGGTC AGGCTTATCC CTGGGAGGCC
TATGCCGGTG TCGAGTATTC AGGCTTCTGG AAGGAAAACC CGCTCGCAAC AGTCGGTGCC
TCCGTTCACT ACATCCGCTT GAGTGAAGAG CGCGCGCAGT ATGAACAGAA TGCCCGGCGG
TTCTTTTCGG GCGTCAACGA GAAACAGCCG CAGGACACGT TCATGGTCGA CGTGCATGCA
AGTACAGGCT TCTTTGGCAA CGGGATTCTC GATTTCGGCG CTGCCTATAT CATCAATCCA
AACAATTCCA TTCTGGCTGA TTACTCAACC GGAAGAGAAA AGAACGGTGT CGTCATTTAC
GCGGCATTGG CTTTCGACCT GGGCGGCAGC CTCGGTCTTT CCCCCCGCAA GGGGCCCTGA
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| Protein sequence | MRTLNLLAVP LLLASLLPAA AADTALPSSD TPPGEGGMPG PVYSGPLASV GRTLHDNGID
LQLDFVDFYQ NAPSFGAAGG SSANYGMFIL GVTGNLTPDL RVNLVETINA PTQNVDNYLF
DLSNAFFPVP IVNSDTDLTR FTIEGDLFND RLTVEAGRMG LNRDFMKKGF CGGIGCVPST
PAITLNMPGE ALSVWGGRLA YRLDQTTTLG FGAIEDNSDN WQNGDGWDWG TGDAKGYIAI
ANISHDETFM QNANPLKYEV GAYHRSTSYE DALYNSGWGN PTFGANTKIV NHDGGTSGVY
GQVRKVVWSE ASGSPIPENL AVYGGLFHTF GDGQAYPWEA YAGVEYSGFW KENPLATVGA
SVHYIRLSEE RAQYEQNARR FFSGVNEKQP QDTFMVDVHA STGFFGNGIL DFGAAYIINP
NNSILADYST GREKNGVVIY AALAFDLGGS LGLSPRKGP
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