Gene Avi_5309 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5309 
Symbol 
ID7380673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand- 
Start bp310237 
End bp310734 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content56% 
IMG OID643648935 
ProductTranscriptional regulator 
Protein accessionYP_002547172 
Protein GI222106381 
COG category[K] Transcription 
COG ID[COG1846] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00683555 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCACAAG CCGAAGGATT ATTTTCGGAC CTTATTAGTC AGTGGGAAGA GGATTTCCCG 
GGGGAAGACA GCAGTCCCAT CGCGATTGCC ATGAGGCTTC GGCATCTTTA CCTCCTGGAC 
CAGGCCTCCC TGGAGGAGGT GCTGGTGGCA TTCGATATCG GCATCGGCGA AGTCGATGTT 
CTCACCCATC TTCGGCATCA ATCCCCACCC TACCGGTTGC GACCAAGCGA TCTTGCCGAA 
CTTTGCATGG TCACGACCGG GGCGATAACT GGCCGTATCA CCAGATTGGA AGACAAAGGG 
TTCGTCGAGC GCGTCCCGTC TCTCTCAGAT AAACGCACGG TCTATGTACA AATGACCGAA 
AGCGGTGAAA AGCTGTTGCG TGAGACGCGG GTACAGGTGG CCAGGTCCTC GCATTTTCTG 
GACGGCATTC GCAGCCTTTC CGCGCCTGAA CGCACCCGCT TGGACCGGCT TCTTGCCAAA 
TTGATCCAGG TTTTGTGA
 
Protein sequence
MPQAEGLFSD LISQWEEDFP GEDSSPIAIA MRLRHLYLLD QASLEEVLVA FDIGIGEVDV 
LTHLRHQSPP YRLRPSDLAE LCMVTTGAIT GRITRLEDKG FVERVPSLSD KRTVYVQMTE 
SGEKLLRETR VQVARSSHFL DGIRSLSAPE RTRLDRLLAK LIQVL