Gene Avi_5303 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5303 
SymbolxylR 
ID7380668 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp305336 
End bp306475 
Gene Length1140 bp 
Protein Length379 aa 
Translation table11 
GC content60% 
IMG OID643648930 
Producttranscriptional regulator ROK family 
Protein accessionYP_002547167 
Protein GI222106376 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTTTGC GTGGCACCAA TCAAGAATCA GGAAGGCCGT ATAATCGGCG GATCGTTTTG 
GAATCGATCC GGCTGCATGG GCCGACAACA CGCGGCGATA TCGCCGAACG GGTGGGCCTG
ACGGTCCAGA CTGTCTCCAC CATTGTGCGC GAACTTGAGG ATCAGGGGCT TCTCCTTTCG
GTACGGGAAA AACCAAAGGG GCGCGGGATT CCGCCGTCGG CACTGACCAT CAACCCGGAA
GGCGGGCATG CTGTCGGCAT TCACCTCACA CCGCTCGGCA TTGAAGCGGC ACTCGTCAAT
CTTCGTGGCG AAGTGGTCGA AAGCCGCCAG CGCTCGGCGC CGAATGCCAT GCCGGACGAG
GCTTTTGCCT TGATCGGGGA GATGGTCGCA GACCTGAAGG CAAGCTCGCG CCGGGGCCGG
TTGCTCGGTG CCGGTCTGGC CCTGCCTGGC CCGTTCGATG TGGACTCCAT GAGCTTCGTT
GGGCCGACCA CCATGGCGGG CTGGAAGAAT GTCTATATCC GTCAGCGGCT TGCCGATGCG
ACGGGTCTGC CAGCCTTCAT GGAAAACGAC ATGGCAGCGG CGGCTTTGGG CGAGCAGTTG
TATGGTCTCG GACAACAGTT TTCGGATTAT TTCTATCTGT TTTTCAGCGT TGGTCTCGGG
GGTGCCATGA TGCATGACGG CGTCGTGATG CGGGGAGCCT GGGGCAATGC CGGTGAAATC
GGCCATATCG CCGCCGTTCC CGATGGTGAG TTGTGTCATT GCGGAAACTG CGGCTGCCTG
GAGCGCTATC TGTCGCTTGA TGCATTCAAG AGAAGTGGTT TGTCTGAGGA GGATTGGGTC
GATGTGATTG CGCCGATTTT CCGCAGCGCG ATCCGCACGA TCGAAAACCT GTTCGACCCG
GAAACCATCG TGCTGGGCGG ACTCGCGCCG CAATCCCTGA TCGAGCGGCT GGCGACGCTT
GGTGAGGGTC TCACCAACTC GATTTCCGCC CGCACTAACC GCACCGTTCC ACGGGTTGTG
GTTGCCAGCG ACTGTCAGCG CTCGGCGCTG CGGGGGGCTG CTGCACTCGC GGTCTTCGGT
GTTCTGTCGC CGCGCTTCGG TCAGATGTTT GAAACCTCAG AGAAAGGGAT TGCCGTATGA
 
Protein sequence
MALRGTNQES GRPYNRRIVL ESIRLHGPTT RGDIAERVGL TVQTVSTIVR ELEDQGLLLS 
VREKPKGRGI PPSALTINPE GGHAVGIHLT PLGIEAALVN LRGEVVESRQ RSAPNAMPDE
AFALIGEMVA DLKASSRRGR LLGAGLALPG PFDVDSMSFV GPTTMAGWKN VYIRQRLADA
TGLPAFMEND MAAAALGEQL YGLGQQFSDY FYLFFSVGLG GAMMHDGVVM RGAWGNAGEI
GHIAAVPDGE LCHCGNCGCL ERYLSLDAFK RSGLSEEDWV DVIAPIFRSA IRTIENLFDP
ETIVLGGLAP QSLIERLATL GEGLTNSISA RTNRTVPRVV VASDCQRSAL RGAAALAVFG
VLSPRFGQMF ETSEKGIAV