Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5303 |
Symbol | xylR |
ID | 7380668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 305336 |
End bp | 306475 |
Gene Length | 1140 bp |
Protein Length | 379 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643648930 |
Product | transcriptional regulator ROK family |
Protein accession | YP_002547167 |
Protein GI | 222106376 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTTTGC GTGGCACCAA TCAAGAATCA GGAAGGCCGT ATAATCGGCG GATCGTTTTG GAATCGATCC GGCTGCATGG GCCGACAACA CGCGGCGATA TCGCCGAACG GGTGGGCCTG ACGGTCCAGA CTGTCTCCAC CATTGTGCGC GAACTTGAGG ATCAGGGGCT TCTCCTTTCG GTACGGGAAA AACCAAAGGG GCGCGGGATT CCGCCGTCGG CACTGACCAT CAACCCGGAA GGCGGGCATG CTGTCGGCAT TCACCTCACA CCGCTCGGCA TTGAAGCGGC ACTCGTCAAT CTTCGTGGCG AAGTGGTCGA AAGCCGCCAG CGCTCGGCGC CGAATGCCAT GCCGGACGAG GCTTTTGCCT TGATCGGGGA GATGGTCGCA GACCTGAAGG CAAGCTCGCG CCGGGGCCGG TTGCTCGGTG CCGGTCTGGC CCTGCCTGGC CCGTTCGATG TGGACTCCAT GAGCTTCGTT GGGCCGACCA CCATGGCGGG CTGGAAGAAT GTCTATATCC GTCAGCGGCT TGCCGATGCG ACGGGTCTGC CAGCCTTCAT GGAAAACGAC ATGGCAGCGG CGGCTTTGGG CGAGCAGTTG TATGGTCTCG GACAACAGTT TTCGGATTAT TTCTATCTGT TTTTCAGCGT TGGTCTCGGG GGTGCCATGA TGCATGACGG CGTCGTGATG CGGGGAGCCT GGGGCAATGC CGGTGAAATC GGCCATATCG CCGCCGTTCC CGATGGTGAG TTGTGTCATT GCGGAAACTG CGGCTGCCTG GAGCGCTATC TGTCGCTTGA TGCATTCAAG AGAAGTGGTT TGTCTGAGGA GGATTGGGTC GATGTGATTG CGCCGATTTT CCGCAGCGCG ATCCGCACGA TCGAAAACCT GTTCGACCCG GAAACCATCG TGCTGGGCGG ACTCGCGCCG CAATCCCTGA TCGAGCGGCT GGCGACGCTT GGTGAGGGTC TCACCAACTC GATTTCCGCC CGCACTAACC GCACCGTTCC ACGGGTTGTG GTTGCCAGCG ACTGTCAGCG CTCGGCGCTG CGGGGGGCTG CTGCACTCGC GGTCTTCGGT GTTCTGTCGC CGCGCTTCGG TCAGATGTTT GAAACCTCAG AGAAAGGGAT TGCCGTATGA
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Protein sequence | MALRGTNQES GRPYNRRIVL ESIRLHGPTT RGDIAERVGL TVQTVSTIVR ELEDQGLLLS VREKPKGRGI PPSALTINPE GGHAVGIHLT PLGIEAALVN LRGEVVESRQ RSAPNAMPDE AFALIGEMVA DLKASSRRGR LLGAGLALPG PFDVDSMSFV GPTTMAGWKN VYIRQRLADA TGLPAFMEND MAAAALGEQL YGLGQQFSDY FYLFFSVGLG GAMMHDGVVM RGAWGNAGEI GHIAAVPDGE LCHCGNCGCL ERYLSLDAFK RSGLSEEDWV DVIAPIFRSA IRTIENLFDP ETIVLGGLAP QSLIERLATL GEGLTNSISA RTNRTVPRVV VASDCQRSAL RGAAALAVFG VLSPRFGQMF ETSEKGIAV
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