| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5277 |
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| Symbol | |
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| ID | 7381396 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 277861 |
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| End bp | 279468 |
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| Gene Length | 1608 bp |
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| Protein Length | 535 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643648908 |
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| Product | cytosine deaminase |
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| Protein accession | YP_002547145 |
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| Protein GI | 222106354 |
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| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
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| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACGCAGG CCATTACGAT GCCGGACAAT CCCGGCGCAG ATTGCATCAT CGAGGCCGGC
ATCGTGCTGA CCGGCCTTGA TGCCGGCAGC GGGCTGACCG GCCTTGGCGC GGATGGCAAA
ATGACCATGC GCCACGATGT CGGCATCCGC GTCGAGAAGG GCATGATTGC ACAGATCGGT
CCGATGGAAG CGGTCGGCTA TGGCAACGAC CACCTGCCAC GCTTTGGCTC GCGCCGGATG
ATCGCCATGC CGGGCCTGGT CAACGCGCAT CACCATTTCG GTGTGACACC ACTGATGCAA
GGCGTGCCTT TCGCGCCGCT GGAACTGTGG CTGCCGCAAT TTCGCGCCAT GCGCCGGATC
GACCAGCGGC TGGATACGCT TTATTCGGCC ATCGAAATGC TGGAAAGCGG CACGACGACC
GTGCAACACA TCCATAGCGG CTTTTCCGGC ACGCCGGACA GCTGGATGCA GACGGCAGAA
GCAACAATCT CGGCCTATGG CGAAATCGGC ATGCGGCTCG GCTATTGCTT CATGATCCGC
GACCGCAATA TTCTGTCCTA CGAGCCGGAT GCGGATATCT TAAGCCGCCT GCCCGCCAAA
CTGCGCGACT GGATTGCGCC GCAACTGGCC GCTGCCGATA TTCCGGTTCC CCGGCTGATG
GAATTCTATA CCGATCTGCG CGCCCGTTTC ATGAAGGGTA GCCCACAGCA TATCCGCATG
AATCTTGCGC CCGCCAATCT GCACTGGTGC AGCGATAATG CCTTGCAGAC GATTTTCGAG
ACGGCCAAGG CGGCAGGTGG AAATGTCCAC ATGCATCTAC TCGAAACCGA ACGGCAGGCG
GAATTTGCCC GGCGCACCTA TGGCCGCAGC GCGGTTCAGC ATCTGCAAAA ACTGCAATGC
CTTGACGCCA ATGTAACGCT TGGCCACGGC AACTGGATGA GCGGCGAGGA TCTCGACATT
ATCGCCTCCT GCGGCTGCAC AATCTGCCAC AATGCCTCTT CCGGCCTCAG GCTCGGCAGC
GGTATTGCGC CCGTCAACGA GATGCGACGG CGCGGCATTC CGGTTGCCCT CGGCATAGAC
CAGTCGAATA TTGCCGACGA CCGCGACATG ACACTGGAAA TGAAACTGGT CTGGGCGCTG
CACCGGGAAA CCGGCCTTTG GAACGACAGA CCGGATGCGG GCGCGGTGCT GCAAATGGCC
AGCGAACATG GCGCGGCCTC CGCCGGATTT GGTGGATTTA CGGGACGTCT GGAGCCCGGC
TGGCAGGCCG ATATCGTGTT GATGGACAAG GACCGCATTG CCCGCCCGGC TATCAATTCA
CGAACGCCAC CCGTGGAAGC GCTGCTGCAT CGCGGTGGGC GTCACGCCAT AGAACAGGTC
TTCGTCGGTG GGCGGCTGGT CGTCGATGGC GGTCGCGTGA CAACCGTGGA CCGCGATGCT
GTCATGGCGG AAATCGAGGC TATTCTATCA CGCCCGGAAA CGGATGCGGA ACGGTATGCT
TGGCAGGCGG TAGAAACCCT GCTGCCGCAT CTCGAATCCA GCCTGCAACA GTTGGGCCTT
GGGGCTGGTT ATCGTCGTTA CCGCTACAAT TCAATGTCGG ATCAGTAA
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| Protein sequence | MTQAITMPDN PGADCIIEAG IVLTGLDAGS GLTGLGADGK MTMRHDVGIR VEKGMIAQIG
PMEAVGYGND HLPRFGSRRM IAMPGLVNAH HHFGVTPLMQ GVPFAPLELW LPQFRAMRRI
DQRLDTLYSA IEMLESGTTT VQHIHSGFSG TPDSWMQTAE ATISAYGEIG MRLGYCFMIR
DRNILSYEPD ADILSRLPAK LRDWIAPQLA AADIPVPRLM EFYTDLRARF MKGSPQHIRM
NLAPANLHWC SDNALQTIFE TAKAAGGNVH MHLLETERQA EFARRTYGRS AVQHLQKLQC
LDANVTLGHG NWMSGEDLDI IASCGCTICH NASSGLRLGS GIAPVNEMRR RGIPVALGID
QSNIADDRDM TLEMKLVWAL HRETGLWNDR PDAGAVLQMA SEHGAASAGF GGFTGRLEPG
WQADIVLMDK DRIARPAINS RTPPVEALLH RGGRHAIEQV FVGGRLVVDG GRVTTVDRDA
VMAEIEAILS RPETDAERYA WQAVETLLPH LESSLQQLGL GAGYRRYRYN SMSDQ
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