Gene Avi_5269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5269 
SymbolphaA 
ID7381389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp267145 
End bp270048 
Gene Length2904 bp 
Protein Length967 aa 
Translation table11 
GC content58% 
IMG OID643648901 
Productputative monovalent cation/H+ antiporter subunit A 
Protein accessionYP_002547138 
Protein GI222106347 
COG category[C] Energy production and conversion
[P] Inorganic ion transport and metabolism 
COG ID[COG1009] NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit
[COG2111] Multisubunit Na+/H+ antiporter, MnhB subunit 
TIGRFAM ID[TIGR00940] Tmonovalent cation:proton antiporter
[TIGR00943] monovalent cation:proton antiporter 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
CTGCTCGTTG TTCTCCTGCT TCTGCCTTTC GTCGGAAGTC TCTTATCTGT ATTTTTGCTG 
AATACGCCGT CTCGCCGCCT TCCGGCAGGC TCGGCCGCTA TTGTCATGCT CATTTCGCTG
GCGCTGACGG CAAGTCTCTA TCCGGCGGTC GCCGATGGCG GCGTCGTAAG GTTCAACATG
CCATGGCTAC CGCAGCTTGG TCTGGATTTT ACGCTGCGGA TGGATGGCCT GGCCTGGATC
TTCACCATGC TGATCGCAGC CATCGGCTTT CTGGTCGTGC TCTATGCCCG TTATTATATG
TCGGAAGAAG ATCCGGTTCC ACGGTTCTTC TCCTTCCTGC TCGCCTTCAT GGGCGCGATG
CTTGGCATCG TGCTTTCGGG CAATGTCATC CTGCTGTCGG TCTTCTGGGA GCTGACAAGC
ATCTTTTCAT TCCTGCTGAT CAGCTATTGG CATAATAATC CCAACGCGCG CGACGGTGCC
CGAATGGCGC TGACCATTAC CGGGATCGGC GGCTTCTGCC TGTTGATCGG CCTTATTCTG
CTCGGCAATA TCGTCGGCAG CTATGATCTC GACACCATTC TCGACTCCGG CAATGTCATT
CGCGAACATT CCCTTTATGT CCCCGCCCTG GTGTTCATAT TGCTTGGCGC ACTGACGAAA
AGCGCGCAGT TTCCGTTTCA TTTCTGGCTA CCGAACGCCA TGGCCGCTCC AACCCCGGTT
TCGGCCTTTC TCCATTCAGC GACCATGGTC AAAGCCGGGG TGTTTCTGCT GGTGCGGTTC
TGGCCTGTGC TATCAGGCAC CGATGAATGG TTCTGGATTG TCGGAGCGGC TGGGATCACA
ACCTTGTTGC TCGGCGCCTA TTTTGCGATG TTCCAGCAGG ATCTCAAAGG GCTGCTGGCC
TATTCGACTA TCAGTCATCT CGGACTGATC ACAACATTGC TCAGCCTGGG AAGTCCATTG
GCAACGGTGG CGGCGATTTT CCACATGCTG AACCATGCGA CCTTCAAGGC ATCGCTGTTC
ATGGCAGCAG GGATTATCGA TCACGAGACC GGAACCCGCG ATATGCGACG GCTGAGCGGC
CTGTTCCGGT TCATGCCGTT CACCGCAACG CTTGCCATCG TCGCCAGCGC CGCCATGGCT
GGCGTTCCGC TTCTCAACGG CTTTCTGTCC AAGGAAATGT TCTTTGCCGA AGCCGTTGAA
ACCCATGCGG ATTCGATCCT GGACACCATC CTGCCCTATG TCGCAACGCT TGCCAGTGCC
TTCAGCGTCG CCTATTCGCT GCGGTTCATC CACACTGTGT TCTTTGGCCC GCCGCCTCAG
GACTTGCCCG TTGCCCGTCC GCACGAGCCG CCGCGCTGGA TGCGGTTTCC CGTGGAGTTT
CTTGTGCTGG CCTGCCTGAT TGTCGGCATC ATCCCGGCAA TCTCAATCGG TCCCTTTCTT
CACGTCGCCG TCGTCAGTGT TCTCAGGGCC GATACGCCGG AATACAGTCT GGCAATCTGG
CATGGCGTCA ATCTGCCATT GGTGATGAGC ATGATCGCCC TTGTCGGCGG CGGACTGATC
TATTTCCTGT TGAAGGACTA TCTCGCCCGG TGCCACGATG GTCCGCCGTT TTTTCACAAG
TTCAAAGGCC AGCGTATTTT CGAGCGCGTT ATCGTTGAAG TGTCCTGGCA CTGGGCGCGT
ATCGCCGAAC GTCGCCTCGG CACCCGCAAG CTACAGCCGC AACTTCGCTG GCTGGTGACA
GTGGGTTTTG CGGCGGGCAT GCTGCCTCTT TATATCAGAG GCTTCGAGGT TCGCCCGCTT
GTCTATTCCG GCGCCGATCC GGTGTTTGCA GCCCTTTGGG CCATCGGCAT CTGCCTTGCC
ATCGGCACCG CCTATCTGGC GAAATACCAC CGTCTCGCAT CATTGGTGAT GCTCGGTGGC
GTCGGTCTTA TCGTCTGCCT CACCTTCGTC TGGCTCTCGG CACCCGATCT GGCCATCACG
CAATTGTTGG TCGAAATCGT CACCACAGTC CTCATCCTTC TCGGCCTGCG CTGGCTTCCC
AAGCGATCCG AAGGACTTGG CGAAACAATG ACCTTGAGCG CGCGCTTTCG CCGGTTTCGG
GATTTCGCTC TTGCAGTTCT TTGCGGGGTC GCCATGTCGT TCACCGCCTA TGCGGTGATG
ACCATGCCGG TTCCCGATGC CATCGCCAGC TATTTCCTGG AAAACGCCTA TTCGCAGGGC
GGTGGCCGCA ATGTGGTCAA TGTCATACTG GTGGATTTCC GTGGTTTCGA TACGCTGGGC
GAGATTGCCG TTCTCGGGGT TGTCGCACTG ACAGTCTACG GGCTTTTGCG CCGCTTCCGC
CCTGCCGAAG ACAGCATGGG CATGCCGGAA CAGCAGCAGG CGCAAAACCG CTTCGATGAG
GAGCGGCCAG AGCGGTCAGC GGGCGATACG GTGCGCGATT ATCTTCTGAT CCCCTCGGTC
ATCATGCAAT GGCTGTTTCC AGTTATCGTC ACGTTGTCGG TTTACCTGTT CATGCGTGGA
CATGACCTGC CGGGCGGTGG TTTTTCTGCG GGGTTGACGC TGTCGATTGC GTTTCTGCTG
CAATACCTGG CGGGTGGCAC GCGCTGGGCG GAAGATCGTA TCCGTATCCT GCCGCTGCGC
TGGATGGGTA TTGGCCTGTT GACCGCCGTC GCCACTGGCA TCGGTGCCTG GTTGCTCGGA
TATCCGTTCC TCACCTCGCA TTCCCGCTAT ATCGATCTGC CGTTGATCGG CAAGATCCCG
GCGGCAACGG CGCTGCTATT TGATCTCGGC GTGTTCGCCC TGGTGGTCGG CTCCACGGTT
CTTATTCTCG TCGCTCTCGC GCATCAGTCC TTGCGCATCA ATCGCCTGCG CATGATTGAT
GCCTCGAAAT CGGAGGAAGG GTGA
 
Protein sequence
MLVVLLLLPF VGSLLSVFLL NTPSRRLPAG SAAIVMLISL ALTASLYPAV ADGGVVRFNM 
PWLPQLGLDF TLRMDGLAWI FTMLIAAIGF LVVLYARYYM SEEDPVPRFF SFLLAFMGAM
LGIVLSGNVI LLSVFWELTS IFSFLLISYW HNNPNARDGA RMALTITGIG GFCLLIGLIL
LGNIVGSYDL DTILDSGNVI REHSLYVPAL VFILLGALTK SAQFPFHFWL PNAMAAPTPV
SAFLHSATMV KAGVFLLVRF WPVLSGTDEW FWIVGAAGIT TLLLGAYFAM FQQDLKGLLA
YSTISHLGLI TTLLSLGSPL ATVAAIFHML NHATFKASLF MAAGIIDHET GTRDMRRLSG
LFRFMPFTAT LAIVASAAMA GVPLLNGFLS KEMFFAEAVE THADSILDTI LPYVATLASA
FSVAYSLRFI HTVFFGPPPQ DLPVARPHEP PRWMRFPVEF LVLACLIVGI IPAISIGPFL
HVAVVSVLRA DTPEYSLAIW HGVNLPLVMS MIALVGGGLI YFLLKDYLAR CHDGPPFFHK
FKGQRIFERV IVEVSWHWAR IAERRLGTRK LQPQLRWLVT VGFAAGMLPL YIRGFEVRPL
VYSGADPVFA ALWAIGICLA IGTAYLAKYH RLASLVMLGG VGLIVCLTFV WLSAPDLAIT
QLLVEIVTTV LILLGLRWLP KRSEGLGETM TLSARFRRFR DFALAVLCGV AMSFTAYAVM
TMPVPDAIAS YFLENAYSQG GGRNVVNVIL VDFRGFDTLG EIAVLGVVAL TVYGLLRRFR
PAEDSMGMPE QQQAQNRFDE ERPERSAGDT VRDYLLIPSV IMQWLFPVIV TLSVYLFMRG
HDLPGGGFSA GLTLSIAFLL QYLAGGTRWA EDRIRILPLR WMGIGLLTAV ATGIGAWLLG
YPFLTSHSRY IDLPLIGKIP AATALLFDLG VFALVVGSTV LILVALAHQS LRINRLRMID
ASKSEEG