| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5266 |
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| Symbol | phaD |
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| ID | 7381387 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 265182 |
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| End bp | 266813 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643648899 |
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| Product | putative monovalent cation/H+ antiporter subunit D |
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| Protein accession | YP_002547136 |
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| Protein GI | 222106345 |
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| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATGGTT GGGCACACCA TCTGATCATT GCGCCCGTGC TGGTGCCGTT GGTTGCCAGT
GCCGTGCTTC TGCTTGTCGA TGAGCGGCAG AGACTGACCA AGGCGATGAT CAGCCTTGCA
TCCGCAGTCG CACTGGCAGC CATCGCCATC ATTCTGTTTC GCATCGAGAG CGGGCCGAAC
AGTTTTGAGA ATGTCTATCT GGTCGGCAAC TGGGCGGCGC CGTTCGGCAT CGTGCTGGTT
CTGGATGGTC TATCGGCCTT GATGCTGCTG CTGACGGCCT TGCTCGCCAT CCCGGCCTTG
GTATTTTCCT TCGCCCGCTG GCATGCGGTC GGCGCGCATT TTCACAGCAT GTTCCAACTG
CTGCTAATGG GGGTCAATGG GGCTTTCCTG ACCGGTGACC TTTTCAATCT CTTCGTGTTT
TTCGAGGTGA TGCTGGCCGC TTCCTATGGT CTCCTGCTGC ATGGGTCCGG CCCCCTTCGG
GTTAAGGCAG GGTTGCATTA CATTGCCGTC AACCTGGTGG CCGCCCTGCT GTTCCTGATC
GGCGTCAGCT TGATTTACGG CACGGCTGGC ACCCTCAATA TGGCTGATCT TGCGGCCCGC
ATTCCGGAAA TGGAGCCGGA CCGTCGCATG TTGATGGAGG CAGGCGCTGG CATATTGGGT
GTCGTCTTCC TCATCAAGGC GGGCATGTGG CCGCTCTGCT TCTGGCTGCC AACCGCCTAT
AGTGCAGCGT CGGCTCCCGT GGCCGGAATT TTCGCCATCA TGAGCAAGCT CGGGATCTAT
GTCATCCTGC GGCTAACCAT GCTGTTGTTC GCAGAAGGCC CGTCAGCTGG CTTCGGCGCG
GGCGTGCTGC TCTATGGCGG CATGGCAACG CTTGTTTTCG GGACGATTGG TGTCCTCGCC
TCGCAGGCGC TTGGGCGGCT GGCCGGGTTT TCGGTTCTGG TGTCTTCGGG GACGCTTTTG
ATGGTGGTCG GCATCAATGA CGGGGCCGTC TCCTCAGGAG CTCTGCTTTA TCTTGTCAGT
TCGACACTGA CCATCAGCGC ATTCTTCATG CTGATCGAGC TTGTCGAGCG CGGACAGGAT
GCTGGTGCCA ATGTCCTTGC GGTAACGATG GATGCCTATG GCGATGCGGA TGAGCAGGCG
CCCTATGAGG AAGAAGGCGT CACGATGCCC GGCACCATGG CGATCCTTGG CATTTGTTTT
GCTGCCTGCG GAATACTGCT CTCCGGCCTG CCGCCACTGT CCGGCTTCAT CGCCAAATTC
GCGATGCTGT CGGCGATGAT GGGCACCGGT GCCATCGGTT CGCCGCCAAC CATGGCTATC
TGGGCGTTGA TCGTGCTGGT CATCCTGTCG GGCATCGCCG CGCTGATTTC CATGACGCGC
GCTGGCATCC GCACGTTCTG GAGCTCGATC GAAGGCACTG TTCCGCCTGT CCTCGTCATC
GAAATCGTTC CCGTGATGTT TCTGCTGGCG CTCACGCTCG CTCTCACTGT CCAGGCTGGG
CCAGCGATGC ACTATATGGA CACCACGATC CGCGCATTGA GCAACCCGGC AAATTACATC
GACGCGGTCC GCAAGGCGAC GCAAATTCCC GGCTTCAAAA GCCTGTCCAG CACCGGAAAG
GAGAGCGAGT AA
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| Protein sequence | MNGWAHHLII APVLVPLVAS AVLLLVDERQ RLTKAMISLA SAVALAAIAI ILFRIESGPN
SFENVYLVGN WAAPFGIVLV LDGLSALMLL LTALLAIPAL VFSFARWHAV GAHFHSMFQL
LLMGVNGAFL TGDLFNLFVF FEVMLAASYG LLLHGSGPLR VKAGLHYIAV NLVAALLFLI
GVSLIYGTAG TLNMADLAAR IPEMEPDRRM LMEAGAGILG VVFLIKAGMW PLCFWLPTAY
SAASAPVAGI FAIMSKLGIY VILRLTMLLF AEGPSAGFGA GVLLYGGMAT LVFGTIGVLA
SQALGRLAGF SVLVSSGTLL MVVGINDGAV SSGALLYLVS STLTISAFFM LIELVERGQD
AGANVLAVTM DAYGDADEQA PYEEEGVTMP GTMAILGICF AACGILLSGL PPLSGFIAKF
AMLSAMMGTG AIGSPPTMAI WALIVLVILS GIAALISMTR AGIRTFWSSI EGTVPPVLVI
EIVPVMFLLA LTLALTVQAG PAMHYMDTTI RALSNPANYI DAVRKATQIP GFKSLSSTGK
ESE
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