Gene Avi_5261 details

Gene Information

• Locus tag: Avi_5261
• ID: 7381382
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 260885
• End bp: 262903
• Gene Length: 2019 bp
• Protein Length: 672 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648894
• Product: Valyl-tRNA synthetase
• Protein accession: YP_002547131
• Protein GI: 222106340

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATCACA TGAAAGCATC TACGGAGAGT ACTGCGCCAA ATGGCACAGA CACGGTCATC 
GTGCGCGCCG CAATCCATCC AGCCATCGGC ATTGCCCGTA TTGGTGATGC CAAAACCGAA 
TATTTCATCG GTCCCGAAGT CACCGATGCG CCGCCTGAAA ATGCACCGCC GCCATCATTT 
TACCGAGACA AGACGGGCGC CATCAAGCGG CAGGCCGCTC GGTTCCGTAT CTATGGCTAT 
AATGCTGCCG GCGACGTCGT GAGCGAACTG ACCAGCGACA ATGCCGATAT CCATTGGACC 
GTGCATGTCG CCAATCGCAA AGCGCAATGG TACCAGTTCC AGTATGCTCT GGATATTCCA 
GAGGCAATCA ATGCGCCTGA CAATGCCTTT CCCCTGCGTA ATCCCAAAGT CATGGATCGT 
TCGACACTCG CCATTGATCC CGGCCCCCGC AGTATTTCAG GCCGCGGTGT GTCTGGCCCG 
GCCTATGCTT TCGACACTGG CACCTTCAAG GCGGCAGCTG CCGAGCCGGT TGTCGTACCG 
CTGGGTGAAC TCCAGACAGA TGCAGGAGGG CGGCTGATCT TCCTGGGCGG GCATGGTAAA 
TCGGCCTCGC CAACCAATGC CCCGGTTTAT GACCCGGATA ACCCGCCAAG CTTTAACAAT 
GCCAATGATT GGTATGACGA TACGTCCGAC GGCCCTGTGA TGGCGGAGAT TTCCATCAAT 
GGTCAATCGA TCCCTGTGGA ATCGGCCTGG GTGGTGGTCG CACCGCCGAA TTACGCGCCC 
GATATCATCA GCTGGCGCAC GATGTATGAT CTGATGTGCG ATGTGTCGGT TCAGGCGGGC 
TGGATGCCGA TGCCGCGTGA ACCGTCCTTC TCGACGGACA TCCTGCCGAT ATTGCAGCGT 
CTCAGCAATC TGCAATGGGT CAATAAGGGC TTTGCCGCTT ATTTCGGCAA AGGCTGCCCG 
CTGGATTTCA ATAATCCTGA TCTGCTTGCC AAGCTGTCGC AGAAACCGGC AGGATTGAGG 
GAGGGCGATG ACCCCTACGG CGAGTTGCGC CGCACGCTTT TCAACGGCTT CCGCCCGTCC 
GCGCCTATTG TGGCCGAGCC TGTGCAATGG TCGCATGTGC AGCCTTGGAT CTATGGCGAC 
GCCTTCGGCA GTTTCTCGGA AACTGGCCCC GGCAACATGC TGACTATGAC GGGACTGCAA 
GAAGCCATTC TGCGCAAATG GGTGGAAGGC AGCTTCATTG ACGATTGGCC GGAGGCAATA 
AAGCCGGTCT CGAAGATTGA AGAGGTCCCT CTTCCGGGGC AACCGCATAT GCTGGATAAG 
GCCGCCTTGC ATTATTGCCT CTCCGATACA TTCCACCCGG GCTGCGAGAT GACCTGGCCA 
ATGCGCCACG CCAGCCTGTA TTCTGCGCCC TTCCGCATCC GTCTGCGTCC AGCCGGTACT 
CCGGAGCCGG ATTATGGAAC GACCATGACG CCCATTCTGG TGGAAAAGGT CGGCGGGCCG 
CTCTACGATC AGCCGCCGGG CGGCATTACC CGGTGGATGG CAATCCCCTG GCAGGGCGAT 
ACGGCTTTCT GCCGCTCGGG CTATGATCCT GAATTTGATC CTTATTTGCC AACGTTCTGG 
GCGGCGCGCG TACCCAATCA GGTGTTGAGC GAGGAGGATT ACAACAAGGT CATCGATGAA 
ACTTTGCCGC GCGCGGAGCG TATTGCGGCC TATAGCCGCC GTGTCAACTG GCTGCGTGCG 
ATCATGAACC ACGATACAGC GCAGGTCATG ATGGATATGA TCGCTGAATT CGGGCAGCTT 
GGCATTGTCG AGGCACGGCC GGGCGTCAAG GGTGATCCTG ATTTTCCTGA ATATATCTAT 
GTCGAGACAT TGGCCGCCAG CAAACTCAAG CGTGCAGCCG ATCATGCGGT TCGCTTGCTT 
GCAGAGACAC CGCAGCCGCT GACCAAGCTG GAGAAGGCCG GTTGGGCAAG CCGCGAGCAA 
CTCGAAGCAT TTCGAGCTGT GCGTGTTCAA AAGCGTTAA 

 

Protein sequence

MDHMKASTES TAPNGTDTVI VRAAIHPAIG IARIGDAKTE YFIGPEVTDA PPENAPPPSF 
YRDKTGAIKR QAARFRIYGY NAAGDVVSEL TSDNADIHWT VHVANRKAQW YQFQYALDIP 
EAINAPDNAF PLRNPKVMDR STLAIDPGPR SISGRGVSGP AYAFDTGTFK AAAAEPVVVP 
LGELQTDAGG RLIFLGGHGK SASPTNAPVY DPDNPPSFNN ANDWYDDTSD GPVMAEISIN 
GQSIPVESAW VVVAPPNYAP DIISWRTMYD LMCDVSVQAG WMPMPREPSF STDILPILQR 
LSNLQWVNKG FAAYFGKGCP LDFNNPDLLA KLSQKPAGLR EGDDPYGELR RTLFNGFRPS 
APIVAEPVQW SHVQPWIYGD AFGSFSETGP GNMLTMTGLQ EAILRKWVEG SFIDDWPEAI 
KPVSKIEEVP LPGQPHMLDK AALHYCLSDT FHPGCEMTWP MRHASLYSAP FRIRLRPAGT 
PEPDYGTTMT PILVEKVGGP LYDQPPGGIT RWMAIPWQGD TAFCRSGYDP EFDPYLPTFW 
AARVPNQVLS EEDYNKVIDE TLPRAERIAA YSRRVNWLRA IMNHDTAQVM MDMIAEFGQL 
GIVEARPGVK GDPDFPEYIY VETLAASKLK RAADHAVRLL AETPQPLTKL EKAGWASREQ 
LEAFRAVRVQ KR