| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5243 |
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| Symbol | sigW |
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| ID | 7381368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 240698 |
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| End bp | 241276 |
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| Gene Length | 579 bp |
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| Protein Length | 192 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 643648880 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_002547117 |
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| Protein GI | 222106326 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACCGACG ATCCCGATGA AGAACTGGTC AGGCAAGTTG CGACGGGCGA TCAGGCTGCG
ATGCGGACCA TGGTGGCGCG CAAGCTGCCC CGATTTCTGG CGCTTGCCAA TCGCATGCTC
GCCGACCCGG CGGAGGCGGA GGATGTGGCG CAGGAAACCT TTCTGCGCAT CTGGAAACAT
GCCGGTGGCT GGCGACAAGG CCGTGCCCGC TTCGATACCT GGGCGCACCG CGTGGCAATC
AACCTTTGCT ACGACCGGCT GCGCAAGCGG CGCGACGTGC TGATGGCCGA GCCGCCGGAT
CGGATGGACG ACGCGCCTCT GCCGGATGCC GGGTTGACGG GAGGCGAAGC AGACAGCCAG
CGGGTCAATG CGGCCTTGCA GGCGCTCGCA CCCCGGCAAC GGGAAGCAAT CGTCCTGGTT
TACTATCAGG ACATGTCGAA CCTGGAGGCA GCCAGCGTGA TGCAGATCAG CGTCGATGCG
CTGGAAAGCC TTTTGGCGCG TGGACGACGG TCTTTGCAGA AGACGCTGAC CGCAGAAGGC
CTGACCAGCG ACGGGATGAA CGGAGATGGG AATGAGTGA
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| Protein sequence | MTDDPDEELV RQVATGDQAA MRTMVARKLP RFLALANRML ADPAEAEDVA QETFLRIWKH
AGGWRQGRAR FDTWAHRVAI NLCYDRLRKR RDVLMAEPPD RMDDAPLPDA GLTGGEADSQ
RVNAALQALA PRQREAIVLV YYQDMSNLEA ASVMQISVDA LESLLARGRR SLQKTLTAEG
LTSDGMNGDG NE
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