Gene Avi_5238 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5238 
Symbol 
ID7381364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp236944 
End bp238167 
Gene Length1224 bp 
Protein Length407 aa 
Translation table11 
GC content64% 
IMG OID643648876 
Producthypothetical protein 
Protein accessionYP_002547113 
Protein GI222106322 
COG category[S] Function unknown 
COG ID[COG4102] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.261705 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTTTGCG AAAACCTCTC CCCCACCCGC CGCGCCGTTC TCGGCACATC CGGTGCCTTG 
TTTGCCTGGG CCTTCATGCC CCGCTTTGCC CATGCGGCTG GCGGACGCGA TCCCCGCTTT
GTCACCATCA TCCTGCGCGG CGCGCTGGAT GGGCTGACCG CCGTACCGCC CATCGGTGAT
CCCGATTATG AGGGCCTGCG CCAGTCAATC GCGCTGAGGC TGGATGGCGA CAAGCCGGTG
CTGCCGCTCG ACGGCTTTTT CGGATTGCAT CCCTCGATGC CGAATTTCCA ACGCCTGTTC
CGCGCCAATC AGGCCGCCGT AGTCCATGCC AGTGCCACCG CCTACCGTGA GCGCTCGCAT
TTCGATGGAC AGGATGTGCT GGAATCCGGC TTTCCGACGC CCGGACATGT CGAAACCGGC
TGGATGAACC GAATGCTGGA GGGATTGCCA GCTGGGGACA AGATTGCTCC CGGTGCGGCA
GAGCGCGTGC AGGGGCTTTC CGTAGGAGCA ACCGCGCCCT TGGTCATTCG CGGCAAGGCA
CCTGTGCTCG GCTGGGCACC GTCCGTACTG CGACCCGCCG ATGGCGACCT TGCGCCACGC
CTGATGGACC TTTATGGCCG CACGGACCCG ATGCTGTCGA AACTTTTGAT TGAAGGCATC
CAGACCGGCA AGATCGCATC CGGCCTCGAC ATGAAGTCGA AAGGCGGCCC CGGCGACCCG
AACGGCATGG AGCAAATGGC CCGCGGCGCT GCCCGGTTGC TAGCCCAACC GGATGGCCCG
CGTGTCGCAG CACTTGCCTT CGAGGGTTGG GACACGCACG CGCAGGAAAT CGACCGGTTG
GCAAAGCTTC TGGCTGGCCT CGACAAGTCT ATTGCCGCCT TCGAACAGGA ACTTGGACCC
GCATGGAAGG ATACGGCGAT CATCGTTGCA ACGGAGTTCG GTCGCACGGC ACGGATCAAC
GGCACTGATG GAACCGACCA CGGCACCGGC ACGACCGCCT TCCTCGCTGG CGGTGCCGTG
CGGGGTGGCC GCATCATCAC CGACTGGCCG GGGCTGAAGC AGAACCAGCT GTTCGAAGGC
CGGGATCTGG CCGCCACCAC CGACATTCGC GCCGTGATCA AAGGCATGGC GGTCGATCTT
CTTGGCGCCA GTGCCGGTCA TCTGGCCAGT GTTGTGTTTC CAGGCTCGGA CAGTGTTCAG
CCGATGAAGG GCTTAATCGT CTAA
 
Protein sequence
MLCENLSPTR RAVLGTSGAL FAWAFMPRFA HAAGGRDPRF VTIILRGALD GLTAVPPIGD 
PDYEGLRQSI ALRLDGDKPV LPLDGFFGLH PSMPNFQRLF RANQAAVVHA SATAYRERSH
FDGQDVLESG FPTPGHVETG WMNRMLEGLP AGDKIAPGAA ERVQGLSVGA TAPLVIRGKA
PVLGWAPSVL RPADGDLAPR LMDLYGRTDP MLSKLLIEGI QTGKIASGLD MKSKGGPGDP
NGMEQMARGA ARLLAQPDGP RVAALAFEGW DTHAQEIDRL AKLLAGLDKS IAAFEQELGP
AWKDTAIIVA TEFGRTARIN GTDGTDHGTG TTAFLAGGAV RGGRIITDWP GLKQNQLFEG
RDLAATTDIR AVIKGMAVDL LGASAGHLAS VVFPGSDSVQ PMKGLIV