| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5211 |
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| Symbol | |
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| ID | 7381341 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 207483 |
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| End bp | 208559 |
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| Gene Length | 1077 bp |
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| Protein Length | 358 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648853 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_002547090 |
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| Protein GI | 222106299 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAGAC GAATGATCCT ATGTACCACA GGCGTTCTTG CCGTGTTTCT AACCGCCTGT
TCGGATGAAG CCAGCACGCC AAAGACACCT CGCGCCATTA AAGGGGTCAC AGTCAAATCG
GAGCTTATCG GGGAAGTCTT TCGCCAGACC GGCGAGATCC GCCCACGTTA TGAAACGCCG
ATGAGCTTCA GGATCGATGG ACTGGTGGCT TTTCGCGTCG AGACGGGATC ATCCGTCAAA
AAAGACGATG TGCTTGCAAC AGTAGAAAAG ACACCGGCCT TGATCAATGT CGCGTCCGCA
TCCGCGCAAG TCGATGCGGC AAAATCGGAT TTGGCGCTGG CGGATGTTAA CGCGGCTCGC
AACTGGAACC TCATCGCCAA GAATGCGGTG TCGCGCGCCC AGGTCCAGCA GAGCGATGCC
AATCTGCAAG CGGCGAAGTC AAAGCTTGAA GTCGCCAACG CGACTTTGGC GAGCGCACAA
CAGAACCTCT CCTATACGGA TCTGAAAGCG GGACGAGACG GTATCGTATC CGGCGTTTCC
ATCAATGTGG GTCAGGTCGT CACCACGGGG CAAACGGTCC TGACCCTCAG TTCTGATACC
GAACTTGATG CCGTCTTCGA TGTGCCTGAA CAGATGCTAA CCCAGAACCT TGGCGATAGC
GAGGTTGACG TCAGCCTGAT GTCCAATCCG GCCGTTGTCG CCAAGGGCAA GGTTCGCGAG
GTCACGCCTT CCGCTGATAC TGCAACGCGG ACCTACCGTG TCAAGGTTAC GTTGAATGGC
ACGTTGGACG GGGCGCCGTT GGGCGCTGTG GTCACGGGTA AGGTAACCCT TTCGCCAAAG
CCTGTCTTCA AGGTTCCCGC GTCTGCATTA ACCAGTCAGG GGCAGAACCA AGCCGTTTTC
GTCTACTTAC CGACCTCCAA AATGCTCCAG CTTCGCCCGG TCAAAATAGA ACGATACGGC
GAAAACGACA TGCTCATCTC CGAAGGCCTG GCCGATGGCG ATATCGTCGC GATCGCCGGT
GTTAGCAAGT TGCGCGACGG CGAGGCGGTC ACTCTTGAGA AAGGGGTGCA ATCGTGA
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| Protein sequence | MLRRMILCTT GVLAVFLTAC SDEASTPKTP RAIKGVTVKS ELIGEVFRQT GEIRPRYETP
MSFRIDGLVA FRVETGSSVK KDDVLATVEK TPALINVASA SAQVDAAKSD LALADVNAAR
NWNLIAKNAV SRAQVQQSDA NLQAAKSKLE VANATLASAQ QNLSYTDLKA GRDGIVSGVS
INVGQVVTTG QTVLTLSSDT ELDAVFDVPE QMLTQNLGDS EVDVSLMSNP AVVAKGKVRE
VTPSADTATR TYRVKVTLNG TLDGAPLGAV VTGKVTLSPK PVFKVPASAL TSQGQNQAVF
VYLPTSKMLQ LRPVKIERYG ENDMLISEGL ADGDIVAIAG VSKLRDGEAV TLEKGVQS
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