| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5184 |
|---|
| Symbol | |
|---|
| ID | 7381321 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 179017 |
|---|
| End bp | 180669 |
|---|
| Gene Length | 1653 bp |
|---|
| Protein Length | 550 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643648834 |
|---|
| Product | ABC-type transporter, substrate binding protein |
|---|
| Protein accession | YP_002547071 |
|---|
| Protein GI | 222106280 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.532866 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAC ATTCCGATTC TATGGCTCTT TCTCGACGCA GGTTGCTGCT TGCCGGTTCT
GCAATCCTCT CTGTCGCTCT TGTCGCATCA ACTGGCTTGA AGCCCGCTCA TAGCGCGGGC
AACGCGAAAG ACGGCGGCGA TATTACGTTC CTGATCGACT CGTTGGGCAA TACTTGGATA
CCCAACAACA GCGCGATCTC CAGCTTTCAG GGGCATGTCT GGGGCCACGT GGCCGACAAG
CTCGTCTATG TCGATGCCGA TGGCAAAGTG AGCCCGTGGA TTGCTGAGCG CTGGGACCAG
AATGAAGGCG CAACCGAGTT CACCCTCCAT CTCAAGACCG GCGTGACCTT TTCTGACGGC
ACGCCACTCG ACGCGGCCGC TGTCGTTGCA AATCTCGATA TCTGGTATGC AGGCCGCAAG
AGCGAAGGCA TCAACCCGAT CGGCCTTTTT CCCAAGACCT ACGATCATGC AGAGGCGATT
GATCCGTCCA CGGTGAAAGT CGTCTTCAAA AAGCCGACGC TCGGCTTCAT TCCAACCCTC
GGCTATCACG GCTCGATCCT GATTTCCCCC AAGACCATCA GCCAACCGGC GACCCAGCAG
GCAGATCTCG GCAAGACCTC TGGCAGCGGC CCTTATGTGG TTGAATCCTG GAAGGAAGGC
GATTTCGTCA AACTGGTGAA GCGCAAGGAT TACAATTGGG GACCGGCAGC TGTGGGCCAT
ACCGGACCAG CGTTTCTGGA TAGCATCACC TACAAGCTGG TCTCCGAACC ATCGCTTCGG
GTTGCGGCAG TTCAATCCGG GCAGGCCGAT ATTGCCTATA ATGCCTCGCC CCAGGAGTTG
AAGTCGCTCA AGGACGAGGG CTTTACCGTT GCCACGCCGC GTTATCTCGG GTTCGTCAAT
GGCTGGGCGG TGAATACCAA GCTCGAGCCC TATAACGATG TCAGGGTGCG CCAAGCCCTT
CAGTCTGGCA TCGATCGCCA GGAAATCATC GATACGGTCT ATACATCGGA TTGGAAGCTG
GCGACCTCGT TCATCCAGAG CAATGTGCCG GGCGCAACCG ACCAGAGCAC GCTTTTGGCC
TACGACTCCG CGAGGGCGGA AAAGCTGCTG GATGACGCAG GCTGGACGAA AGGCGCCGAC
GGCATCCGCG CCAAGGATGG AAAGCCGCTT CTGCTGACGC TTTACTCCAA CCCCTATCTT
GCCACGTCGA AGGCGGTGGA TGAACTGATC GCCCAACAGC TCGGCAAGAT CGGCTGGAAG
GTCAATATCC GCACCTATGA CGTGGTGACC TTCACCGAAA AGGTCAAGTT CGCAGGCCCA
GCCGTACCAG CCTACGAAGT TACCCGCAGC TTTATCGATG CCGGCACCGT GGCCAGCATT
CTGACCGATG CCAATAATGG CGAAAACTGG TTCGCGCTGG ACCAGAGCGA CCAGAAGATC
AATGAGCTAC GCGATAGAAT TGCAGGTGCC CCTTCGTTAG AGGTGCGTGA TCCGCTGCTG
AACGAACTAC AGAAATACGT CATCGAGCAA GGGTATTTCA TCCCTCGCAC CCAGATCGTT
CAGCGCATTT ATGTCCAGTC CCCGAAGCTT TCAGGCGAAG TCTATAACGG CATTGCCTAT
GCCAGCTACT ACACCGCAAA AATCAGCCAA TAA
|
|---|
| Protein sequence | MIKHSDSMAL SRRRLLLAGS AILSVALVAS TGLKPAHSAG NAKDGGDITF LIDSLGNTWI
PNNSAISSFQ GHVWGHVADK LVYVDADGKV SPWIAERWDQ NEGATEFTLH LKTGVTFSDG
TPLDAAAVVA NLDIWYAGRK SEGINPIGLF PKTYDHAEAI DPSTVKVVFK KPTLGFIPTL
GYHGSILISP KTISQPATQQ ADLGKTSGSG PYVVESWKEG DFVKLVKRKD YNWGPAAVGH
TGPAFLDSIT YKLVSEPSLR VAAVQSGQAD IAYNASPQEL KSLKDEGFTV ATPRYLGFVN
GWAVNTKLEP YNDVRVRQAL QSGIDRQEII DTVYTSDWKL ATSFIQSNVP GATDQSTLLA
YDSARAEKLL DDAGWTKGAD GIRAKDGKPL LLTLYSNPYL ATSKAVDELI AQQLGKIGWK
VNIRTYDVVT FTEKVKFAGP AVPAYEVTRS FIDAGTVASI LTDANNGENW FALDQSDQKI
NELRDRIAGA PSLEVRDPLL NELQKYVIEQ GYFIPRTQIV QRIYVQSPKL SGEVYNGIAY
ASYYTAKISQ
|
|---|
| |