| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5172 |
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| Symbol | |
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| ID | 7380970 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | + |
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| Start bp | 166455 |
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| End bp | 167237 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 643648823 |
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| Product | ABC transporter membrane spanning protein (amino acid) |
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| Protein accession | YP_002547060 |
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| Protein GI | 222106269 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.146272 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGTCGC CAATGCTTCA CAACCCTGCG GGCCGCAGCC CCGCGCTGCG CAATATAGCT
CTTGTCGCCT TGCCGCTAGC AATCCTTATC TGGGCATTGG CCGATCTGTC GCTTGGCCGT
GAACTGGTGC AATGGCTTCC TTATCTCGGC TCCGGCTTTG CGATGAACAT CGTCATCAGC
CTGTCGGCGA TGACGCTGGG AAGCGTGCTG GGTATCCTGC TCGGCATGCT GCAAATGGTG
CCATTCCGGC TGGTCCGCTA CCCGGCTGCG GTCTATGTGC AGGTGTTTCG CAATGCGCCG
CATCTGGTGC TGATCTTTGC GACAACCTAT ATCTTTCCCT TCGAGATCAT CGTCTTTGGC
AATTATCTGT CCTTTCCCGA TTGGGTGAAA GCCATGGTCG GTCTGGCCAT CCCGGCAAGC
GCCTATATCG CCGAAATCAC CCGTGGTGCC ATTCTGTCCA TTCCGACCGC GCAATGGGAG
GCGGCACAAG GCCTGGGCTT TTCGCGCTGG CAGGCGCTGC GCTGGATCAT CCTGCCGCAA
TGCCTGCGCC GGTCGCTGCC GCCATGGATG AATGTGCTTG CCTCGATCAC CATGGGGACT
TCGCTGGCCT CGCTGGTCGG CGTCCATGAA CTTCTCCATG CCGCCACCGA TGCTAGCACG
TCCGTGCGGC GGCTTGATTT TACCGTCATT GCCTATGTCG TGGTGATGGC TGCTTTCTTC
GCGCTTTGCT ACCCGATCGC CCGTCTGACC CGCCGTCTGG AGCGCCGTTT CAAGGCGGCC
TGA
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| Protein sequence | MMSPMLHNPA GRSPALRNIA LVALPLAILI WALADLSLGR ELVQWLPYLG SGFAMNIVIS
LSAMTLGSVL GILLGMLQMV PFRLVRYPAA VYVQVFRNAP HLVLIFATTY IFPFEIIVFG
NYLSFPDWVK AMVGLAIPAS AYIAEITRGA ILSIPTAQWE AAQGLGFSRW QALRWIILPQ
CLRRSLPPWM NVLASITMGT SLASLVGVHE LLHAATDAST SVRRLDFTVI AYVVVMAAFF
ALCYPIARLT RRLERRFKAA
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