Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5162 |
Symbol | |
ID | 7380962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 156998 |
End bp | 158044 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 643648815 |
Product | ABC transporter binding protein |
Protein accession | YP_002547052 |
Protein GI | 222106261 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACATCGA TCCTGCGCCT TCTGGCATTC ACCGCTCTTT CACCTTTGGT TTTAACGCAC TCGGCTGTTG CGGCTGGTAT TGCTGGCGCA CCGGCGCCGT TTGACCAAGG TGGCGTCAAG CTGGCGCTGA TTAGTTATAT TTCCGCTGGC GATTTCTTTC AGGCCTATCA GGCGGGCGCA CAGGCGCAGG CCAAGGCGCT GGGGGTTGAT CTGAGGATTT TCCCCGGTCG TCAGGATGCT GCCGAGCAGC GCGAGCAGAT TTTACAGGCG ATTAATCTCG GCGTGAAAGG CATTGTCATT GACCACGGCC TGCCGGAATC GCTCAGCGAT GTCGTCCAGC AGGCGCTCGA CAAGGGCATA AAGGTCGTGG CTTTCGATGT GAACCTGAAC AACCCGAAAA TCCCGCAGGT GGAACAATCC GACCACAAAC TGGCCGAACT GACGCTGGAT CAGGCGATCA AGGATAATGG CAAGAGTTTC AATGCTGGAT ATGCCTATGT CGCTGGTTTT GCACCCTTGG ATCGCCGCAA TGAAATCTGG GACAAGGTCA AAGCTGCCAA CAGCGGCATT GTTGAAAAAG CACGTTTCGG CACGGTCAGC GACACCACAG CCACCTCCAC CGCCGATCAG GCCAAAGCGG TGTTTCGTGC CAACCCGGAT ATTTCCGTAG TTTTTGCGCC CTATGATGAA TTCGCCCGTG GCGTCAAACT CGCTGCCGCC GATCTGGGCA TCAGCGCCAA GCTGAAAATC TATTCGGCGG ATATTTCCAC CGCTGACATT CAGGAAATTG TTGAGGATGG CAGCCCCTGG GTGGCAACCG CTGCCACCAA TCCGGCAGTC GTGGGTGCCG TTTCCATCCG CGCTGCCGCC TTGCAGATTG CCGGCGAAAC GGTGCCGCAT CAGATTATTG TCGATCCGGT TCTGGTGACG CAAAAGCAAT TGCGGGATGC CAACGTCAAG ACCATCGAAG AATTGGCCAA GAAAATTCCA AGCTTCTCGA CAAGCTCTGC TGTCACGGCA AGCTGGATTC CGTCTGCTGC TTTTTGA
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Protein sequence | MTSILRLLAF TALSPLVLTH SAVAAGIAGA PAPFDQGGVK LALISYISAG DFFQAYQAGA QAQAKALGVD LRIFPGRQDA AEQREQILQA INLGVKGIVI DHGLPESLSD VVQQALDKGI KVVAFDVNLN NPKIPQVEQS DHKLAELTLD QAIKDNGKSF NAGYAYVAGF APLDRRNEIW DKVKAANSGI VEKARFGTVS DTTATSTADQ AKAVFRANPD ISVVFAPYDE FARGVKLAAA DLGISAKLKI YSADISTADI QEIVEDGSPW VATAATNPAV VGAVSIRAAA LQIAGETVPH QIIVDPVLVT QKQLRDANVK TIEELAKKIP SFSTSSAVTA SWIPSAAF
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