Gene Avi_5162 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5162 
Symbol 
ID7380962 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp156998 
End bp158044 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content56% 
IMG OID643648815 
ProductABC transporter binding protein 
Protein accessionYP_002547052 
Protein GI222106261 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATCGA TCCTGCGCCT TCTGGCATTC ACCGCTCTTT CACCTTTGGT TTTAACGCAC 
TCGGCTGTTG CGGCTGGTAT TGCTGGCGCA CCGGCGCCGT TTGACCAAGG TGGCGTCAAG
CTGGCGCTGA TTAGTTATAT TTCCGCTGGC GATTTCTTTC AGGCCTATCA GGCGGGCGCA
CAGGCGCAGG CCAAGGCGCT GGGGGTTGAT CTGAGGATTT TCCCCGGTCG TCAGGATGCT
GCCGAGCAGC GCGAGCAGAT TTTACAGGCG ATTAATCTCG GCGTGAAAGG CATTGTCATT
GACCACGGCC TGCCGGAATC GCTCAGCGAT GTCGTCCAGC AGGCGCTCGA CAAGGGCATA
AAGGTCGTGG CTTTCGATGT GAACCTGAAC AACCCGAAAA TCCCGCAGGT GGAACAATCC
GACCACAAAC TGGCCGAACT GACGCTGGAT CAGGCGATCA AGGATAATGG CAAGAGTTTC
AATGCTGGAT ATGCCTATGT CGCTGGTTTT GCACCCTTGG ATCGCCGCAA TGAAATCTGG
GACAAGGTCA AAGCTGCCAA CAGCGGCATT GTTGAAAAAG CACGTTTCGG CACGGTCAGC
GACACCACAG CCACCTCCAC CGCCGATCAG GCCAAAGCGG TGTTTCGTGC CAACCCGGAT
ATTTCCGTAG TTTTTGCGCC CTATGATGAA TTCGCCCGTG GCGTCAAACT CGCTGCCGCC
GATCTGGGCA TCAGCGCCAA GCTGAAAATC TATTCGGCGG ATATTTCCAC CGCTGACATT
CAGGAAATTG TTGAGGATGG CAGCCCCTGG GTGGCAACCG CTGCCACCAA TCCGGCAGTC
GTGGGTGCCG TTTCCATCCG CGCTGCCGCC TTGCAGATTG CCGGCGAAAC GGTGCCGCAT
CAGATTATTG TCGATCCGGT TCTGGTGACG CAAAAGCAAT TGCGGGATGC CAACGTCAAG
ACCATCGAAG AATTGGCCAA GAAAATTCCA AGCTTCTCGA CAAGCTCTGC TGTCACGGCA
AGCTGGATTC CGTCTGCTGC TTTTTGA
 
Protein sequence
MTSILRLLAF TALSPLVLTH SAVAAGIAGA PAPFDQGGVK LALISYISAG DFFQAYQAGA 
QAQAKALGVD LRIFPGRQDA AEQREQILQA INLGVKGIVI DHGLPESLSD VVQQALDKGI
KVVAFDVNLN NPKIPQVEQS DHKLAELTLD QAIKDNGKSF NAGYAYVAGF APLDRRNEIW
DKVKAANSGI VEKARFGTVS DTTATSTADQ AKAVFRANPD ISVVFAPYDE FARGVKLAAA
DLGISAKLKI YSADISTADI QEIVEDGSPW VATAATNPAV VGAVSIRAAA LQIAGETVPH
QIIVDPVLVT QKQLRDANVK TIEELAKKIP SFSTSSAVTA SWIPSAAF