| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5148 |
|---|
| Symbol | |
|---|
| ID | 7380949 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 138620 |
|---|
| End bp | 139675 |
|---|
| Gene Length | 1056 bp |
|---|
| Protein Length | 351 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 643648802 |
|---|
| Product | ABC transporter membrane spanning protein (branched chain amino acid) |
|---|
| Protein accession | YP_002547039 |
|---|
| Protein GI | 222106248 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCTG TTTCGCCCAA CGTGACGCCT GCGAGGATCA CGCCAGCAAA AGCGATGCCG
ATCTCCGTCG CCACCCTGCT GGTGCTTTTG TTGGCCTATG GCATTCTTCC AGTGATCGGC
ACGAGCTACC TGTTCGATGG TATCCTGCTG CCCTTTCTGG CCCTTAGCCT CGCAGGGGTC
GGGCTCAATC TTCTGACCGG TTATGCAGGC CAGGTGTCGC TTGGCAGCGC GGCCTTCATG
GCGGTTGGCG CGTTTGCCTG CTTCAATTTT GACCTGCGGG CCGGTTCCCT GCCGCTTATC
GTCAGCATCC TGCTCGCGGG TCTATCCGCT GCGGCCATTG GCATTGTCTT CGGCTTGCCA
AGCCTTAGGC TGCGCGGCTT CTATCTCGCG GTTTCCACCC TCGCTGCACA GTTCTTCGTC
CAGTGGGCGT TGACGAAATT CAGCTGGTTT TCCAACGATA GCGCTTCGGG TGTGATCGAT
GCGCCGCCGC TAACGCTTGC CGGTTTTACC TTCGAAGGGC CGGTCGGGCG CTACTATTTT
GCGCTGATCA TCGTCACACT CGTCACCTTT CTCGCCCATC GGCTGGTGAT TTCTCAAACG
GGTCGCAATT TCATCGCGGT GCGAGATAAC GAAACGGCGG CGCGCATTAT CGGCGTTCCG
GTGTTACGCA CCAAGCTTCT GGCCTTTGCC GTGTCGTCTT TTATCATTGG TATCGCCGGT
GTGCTCTGGG CCTTTGCCTA TCTGCGCACC GTCGAACCGG CGGGTTTCAA CCTGGATCGT
TCGTTCCAGG TGTTGTTCAT CATTATCATT GGCGGTCTGG CCTCGCTGCG CGGCGCCTTT
TTCGGGGCGG CCCTGATCGT GGTGTTTCCG GTGGTGCTGT CGCGGGTTGG GGCCTTCGTC
TTTGGTGACC TGTTCGATAG CGGCGTGCTC GATATGACGC AGCGTATCGT GCTCGGCGCA
CTCATCATTC TTTTCCTGAT CCTTGAGCCT GATGGGCTTG CCGCCCTTAT CGACAGGATC
CGAAAACGCT TCGGCGTGCC GGTTTGGCCA GCCTGA
|
|---|
| Protein sequence | MSAVSPNVTP ARITPAKAMP ISVATLLVLL LAYGILPVIG TSYLFDGILL PFLALSLAGV
GLNLLTGYAG QVSLGSAAFM AVGAFACFNF DLRAGSLPLI VSILLAGLSA AAIGIVFGLP
SLRLRGFYLA VSTLAAQFFV QWALTKFSWF SNDSASGVID APPLTLAGFT FEGPVGRYYF
ALIIVTLVTF LAHRLVISQT GRNFIAVRDN ETAARIIGVP VLRTKLLAFA VSSFIIGIAG
VLWAFAYLRT VEPAGFNLDR SFQVLFIIII GGLASLRGAF FGAALIVVFP VVLSRVGAFV
FGDLFDSGVL DMTQRIVLGA LIILFLILEP DGLAALIDRI RKRFGVPVWP A
|
|---|
| |