| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5147 |
|---|
| Symbol | |
|---|
| ID | 7380948 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | + |
|---|
| Start bp | 137717 |
|---|
| End bp | 138616 |
|---|
| Gene Length | 900 bp |
|---|
| Protein Length | 299 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 643648801 |
|---|
| Product | ABC transporter membrane spanning protein (branched chain amino acid) |
|---|
| Protein accession | YP_002547038 |
|---|
| Protein GI | 222106247 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.117358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATGGCCG ATTTTGACGG GTTGTTTTTT ACCGAAGTGC TTGTCGGCGG ATTGCTGTCC
GGCGTGATGT ATTCGCTCGT GGCAATCGGT TTCGTGCTGA TTTACAAGAC ATCGGGTGTT
TTGAACTTTG CGCAGGGTGC CATGCTGCTG TTTGCAGCGC TGACCTTCGT CAGCCTCACA
GAGCGCGGGT TTGGTTTTCC GCTCGCCTTC CTGGTTACCT TCGCCATCAT GATCCTGCTC
GGCATTGGCA TTGAGCGGAC GGTCCTTCGT CCGCTCACCA ACAAGCCGCC GATTACCATG
TTCATGGCCA CGCTTGGCCT GTCCTACATG ATTGAAGGGG CAGCCCAACT GCTCTGGGGC
ACGCAGGTAC ATGGGCTTGA TCTGGGCATT GAGGATGTTC CTTTCGATAT CGCGGGTGTG
TTTATCAGCA AGTTCGATAT TTTCGCAGCG GTCGTCGCCT TTGGGCTTGT TGTCGCCCTG
TCCGTGTTCT TTCGCTATAC CCGCATTGGG CTTGGTTTTC GTGCGGTGGC CGATGATCCG
TTTGCGGCTC TCGCCGTGGG CCTGAAACTT CCCTGGATCT GGGCAAGTGT GTGGGCCGCC
GCCGGGCTTG TGGCGCTGGT TGCCGGGCTC TTGTGGGGCG CGCGCTCCGG CGTGCAGTTT
TCCTTGTCCT TGATCGTGCT GAAAGCACTG CCTGTGCTGG TGCTGGGCGG TTTTGATTCC
ATCCTGGGGG CGATTATCGG CGGGCTGCTG ATTGGCGCTT CGGAGAAATT GGCCGAAGTC
TATATCGGGG CCTATTTTGG CGGGGGGATT GAAGGGTGGT TCGCCTATGT GATTGCCCTG
CTGTTTTTAC TTGTGCGCCC CTCCGGTCTT TTCGGCCAAA AGCTCGTGGA AAGGGTTTGA
|
|---|
| Protein sequence | MMADFDGLFF TEVLVGGLLS GVMYSLVAIG FVLIYKTSGV LNFAQGAMLL FAALTFVSLT
ERGFGFPLAF LVTFAIMILL GIGIERTVLR PLTNKPPITM FMATLGLSYM IEGAAQLLWG
TQVHGLDLGI EDVPFDIAGV FISKFDIFAA VVAFGLVVAL SVFFRYTRIG LGFRAVADDP
FAALAVGLKL PWIWASVWAA AGLVALVAGL LWGARSGVQF SLSLIVLKAL PVLVLGGFDS
ILGAIIGGLL IGASEKLAEV YIGAYFGGGI EGWFAYVIAL LFLLVRPSGL FGQKLVERV
|
|---|
| |