Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5143 |
Symbol | |
ID | 7380946 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | + |
Start bp | 134941 |
End bp | 135972 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 643648799 |
Product | transcriptional regulator LacI family |
Protein accession | YP_002547036 |
Protein GI | 222106245 |
COG category | [K] Transcription |
COG ID | [COG1609] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.423786 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGGAAATAA TCGGCAAGCG AAAACAGGCA ACCATCCACG ATGTCGCCGA GGCAGCAGGT GTCGCCATCG GCACGGTGTC CCGCTATCTC AATGGGCAAA CGGTGCGCAA TGGCAACCGC GCCGAAATAG AACGGGCCAT CGAGGCCCTG TCTTTTCAGC GCAGTGCCGC CGCGCGGGCG ATGAAAAGCG ACAAGACCGA TGTGATTGGC TTTTTGACGC CGGAGCTGGA CGAATTTCAT GCCCAGCTCC TCAATCATCT GGCCCGGTTG TTTCGCCAGA GCGGCAGAAC GCTACTGACC TATTGCCATG ATGGTGACAT CAGGCTGCTG AGTGAATCCC TCTCCTATTT TGCGGGACAG AACGTCGATG CGCTCATTCT TGCGGGACAT GGAGACATTC CCAATGACGT CGAGAGATTC GTGGAACGCG GTATTCCCGT AACCGTCTAC AATAATGATA TTATGGGGTT GCGCGTTGAC CGCGTGTTCG TTGAAAATGC CAAGGCATCC TACCGTGCTG TCCGCCATCT GATCGATCTT GGACATACAC GCATTGCCAC CGCCTTTGGC ACATTGGATA CGTCATCGGG ATTGCAGCGC CTGAATGGCT ATCAGCAGGC CCTGGAAGAG GGCAGGATTG CTCTCAACCC TTCCTACCTG CATTCCGGCG ACTGGACCGA AGAAGGCGGA TATTCTGCCA TTCAGAAATT CATGGCACTG GCTGAGCCGC CAACAGCGGT CTTCTCCGCC AATTATAAGA TGACCTACGG CATTCTGGAA TGGGTCCGGG AACACCGAGC AAGGGTGCCG GAAGACATCG CCATTGTTAG TTTCGATGAT GTGGAATTGT TTCGCCTCTA TGATGACGGC GTGACAGCCA TCGCTCAACC TATTGAAAAA ATAGCGCAAT CGATCAGCGC TTATGTTTTG TCGCGGTTAA CACAAGACAA TGTTCCGGAC ATACGCACGC GCACTCTCGA TTGCAATTTG ATATTGCGCG GATCAAGCCA CTTTCGCCGA TCATCCCGAT GA
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Protein sequence | MEIIGKRKQA TIHDVAEAAG VAIGTVSRYL NGQTVRNGNR AEIERAIEAL SFQRSAAARA MKSDKTDVIG FLTPELDEFH AQLLNHLARL FRQSGRTLLT YCHDGDIRLL SESLSYFAGQ NVDALILAGH GDIPNDVERF VERGIPVTVY NNDIMGLRVD RVFVENAKAS YRAVRHLIDL GHTRIATAFG TLDTSSGLQR LNGYQQALEE GRIALNPSYL HSGDWTEEGG YSAIQKFMAL AEPPTAVFSA NYKMTYGILE WVREHRARVP EDIAIVSFDD VELFRLYDDG VTAIAQPIEK IAQSISAYVL SRLTQDNVPD IRTRTLDCNL ILRGSSHFRR SSR
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