Gene Avi_5143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5143 
Symbol 
ID7380946 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand
Start bp134941 
End bp135972 
Gene Length1032 bp 
Protein Length343 aa 
Translation table11 
GC content54% 
IMG OID643648799 
Producttranscriptional regulator LacI family 
Protein accessionYP_002547036 
Protein GI222106245 
COG category[K] Transcription 
COG ID[COG1609] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.423786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAAATAA TCGGCAAGCG AAAACAGGCA ACCATCCACG ATGTCGCCGA GGCAGCAGGT 
GTCGCCATCG GCACGGTGTC CCGCTATCTC AATGGGCAAA CGGTGCGCAA TGGCAACCGC
GCCGAAATAG AACGGGCCAT CGAGGCCCTG TCTTTTCAGC GCAGTGCCGC CGCGCGGGCG
ATGAAAAGCG ACAAGACCGA TGTGATTGGC TTTTTGACGC CGGAGCTGGA CGAATTTCAT
GCCCAGCTCC TCAATCATCT GGCCCGGTTG TTTCGCCAGA GCGGCAGAAC GCTACTGACC
TATTGCCATG ATGGTGACAT CAGGCTGCTG AGTGAATCCC TCTCCTATTT TGCGGGACAG
AACGTCGATG CGCTCATTCT TGCGGGACAT GGAGACATTC CCAATGACGT CGAGAGATTC
GTGGAACGCG GTATTCCCGT AACCGTCTAC AATAATGATA TTATGGGGTT GCGCGTTGAC
CGCGTGTTCG TTGAAAATGC CAAGGCATCC TACCGTGCTG TCCGCCATCT GATCGATCTT
GGACATACAC GCATTGCCAC CGCCTTTGGC ACATTGGATA CGTCATCGGG ATTGCAGCGC
CTGAATGGCT ATCAGCAGGC CCTGGAAGAG GGCAGGATTG CTCTCAACCC TTCCTACCTG
CATTCCGGCG ACTGGACCGA AGAAGGCGGA TATTCTGCCA TTCAGAAATT CATGGCACTG
GCTGAGCCGC CAACAGCGGT CTTCTCCGCC AATTATAAGA TGACCTACGG CATTCTGGAA
TGGGTCCGGG AACACCGAGC AAGGGTGCCG GAAGACATCG CCATTGTTAG TTTCGATGAT
GTGGAATTGT TTCGCCTCTA TGATGACGGC GTGACAGCCA TCGCTCAACC TATTGAAAAA
ATAGCGCAAT CGATCAGCGC TTATGTTTTG TCGCGGTTAA CACAAGACAA TGTTCCGGAC
ATACGCACGC GCACTCTCGA TTGCAATTTG ATATTGCGCG GATCAAGCCA CTTTCGCCGA
TCATCCCGAT GA
 
Protein sequence
MEIIGKRKQA TIHDVAEAAG VAIGTVSRYL NGQTVRNGNR AEIERAIEAL SFQRSAAARA 
MKSDKTDVIG FLTPELDEFH AQLLNHLARL FRQSGRTLLT YCHDGDIRLL SESLSYFAGQ
NVDALILAGH GDIPNDVERF VERGIPVTVY NNDIMGLRVD RVFVENAKAS YRAVRHLIDL
GHTRIATAFG TLDTSSGLQR LNGYQQALEE GRIALNPSYL HSGDWTEEGG YSAIQKFMAL
AEPPTAVFSA NYKMTYGILE WVREHRARVP EDIAIVSFDD VELFRLYDDG VTAIAQPIEK
IAQSISAYVL SRLTQDNVPD IRTRTLDCNL ILRGSSHFRR SSR