Gene Avi_5136 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAvi_5136 
Symbol 
ID7380939 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAgrobacterium vitis S4 
KingdomBacteria 
Replicon accessionNC_011988 
Strand+ 
Start bp125415 
End bp126086 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content59% 
IMG OID643648792 
Producttranscriptional regulator GntR family 
Protein accessionYP_002547029 
Protein GI222106238 
COG category[K] Transcription 
COG ID[COG2186] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.21364 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACATTGC CCAAACGTCT TTACCAACAG ATTGCCGACC AGGTTCGGCA TCTGATCCAA 
AGTGGCCCTT ATCCGGCAGG GGCGCGGCTG CCACCTGAAC GTGAGCTGGC GCAAACCCTG 
GGGGTCTCAC GACCGTCCTT GCGCGAGGCG TTGATTGCGC TGGAAATCGA CGGAACAATC 
GAGATTCGCA TGGGATCGGG CATTTATGTC CTGTCTGCCA GCAAGTCCGC CGCCTCTGGG 
CGATCACTGG GGGAGAGTCC GACAGAGTTG ATGCAGGCGC GTGCCGTCAT TGAAAGTGCT 
GTTATCGTCA AGGCCGCTGC CGCAATGACC GATGCGGTTT TTGCGGCGCT TGTCGGGATT 
GTCGAGTCAA TGCGTCAGGA GATTGCCGGC GGTCGCAAGC CGATTGATCA GGACCGCCAG 
TTTCATCTGA CCATCGCGGA ACAGTCGGGC AATTCGGTGC TGGCGGAGAT CGTCGCCAAT 
CTCTTTGACG AACGCCATAG TCCTATCTCG GACCATATAC GCGGCCGCTT TGAGACGCCC 
GAAACCTGGT CACTGGCGCT GATCGAGCAT GAGGCAATTC TGACTGCGCT GGAAGCACGC 
GACCCGCTCG CAGCACAGGC TGCAATGTAT GCCCATCTGA CGGCATCGCG AAGGCGATGG 
TTGGAGAATT GA
 
Protein sequence
MTLPKRLYQQ IADQVRHLIQ SGPYPAGARL PPERELAQTL GVSRPSLREA LIALEIDGTI 
EIRMGSGIYV LSASKSAASG RSLGESPTEL MQARAVIESA VIVKAAAAMT DAVFAALVGI 
VESMRQEIAG GRKPIDQDRQ FHLTIAEQSG NSVLAEIVAN LFDERHSPIS DHIRGRFETP 
ETWSLALIEH EAILTALEAR DPLAAQAAMY AHLTASRRRW LEN