Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Avi_5134 |
Symbol | rbsC |
ID | 7380937 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Agrobacterium vitis S4 |
Kingdom | Bacteria |
Replicon accession | NC_011988 |
Strand | - |
Start bp | 122632 |
End bp | 123681 |
Gene Length | 1050 bp |
Protein Length | 349 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 643648790 |
Product | ABC transporter membrane spanning protein (ribose) |
Protein accession | YP_002547027 |
Protein GI | 222106236 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1172] Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.180892 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGAGA TCATCACCGA CAAGCCACCG CAGGCGGACC AGAAAAAGGG CCACAAAAGG GGACTGAGCG ACCGGCAAAA AGATATCATC CAGAAATTTG CAGCGCTTGG CTGCCTGGTC GTTCTGGCCG CCGTGTTTGC TCTTACATCC AATGCCTTCC TGAGCGTCAA CAACGGCATG ACGATTGCGC TACAGGTCAC GTCGATTGCC TTTCTCGGCA TCGGGGCAAC CTATGTCATC ATCACCGGGG GCATTGACCT CTCGGTCGGC TCCGTGCTGG CCCTTGCCGG GGTGGTCGCC GCCCTTGCCG TCAAGGAACT CGGCGCGCCG GTGTGGATCG GCATGGTGCT CGGCGTTCTC ACCGGCACGG CCTGCGGCGT CATCAATGGC CTGGTCATTA CCAGGCTGAA GCTGCCGCCG TTCATTGCGA CCCTTGGCAT GATGCTGATT GCACGGGGCG TCGCACTACA AATCACCGGC GCACGCGCCG TCTCGGGCCT TGGCGAATCC TTCGGGGTTT TGGGCAATGG TTCGCTGCTG CGCTTCGAAA GCATTGACGA TCAAGGATTT CCAGTGGTCA GCTTTCCGGG CATTCCCTAT CCCGTGGTGC TGATGGTCGT CATTGCCGTG GCCGCTGCCT TCGTGCTGAA CCGAACCGTG CTTGGCCGGC ATATCTATGC CACCGGCTCG AATGCGGACG CCGCCCAGCT CTCAGGCGTC AATGTCGCCC GCGTCACCGC CTTCACCTAT ATCGTCTCCG GCACGCTGGC CGGTCTCACC GGCTGTATGC TGATGTCTCG TCTCGTCACC GCCCAGCCGA ATGAGGGCGT GGCCTATGAG CTGGATGCAA TCGCGTCTGC GGTGATTGGC GGAACCTCGC TGATCGGCGG TGTCGGCACG ATTTCCGGAA CCTTCATCGG TGCCTTTGTC ATCGGCATCC TGCGCAATGG CCTGAACATG AACGGCGTCT CCGCCTTCAC CCAGCAGATC ATTATAGGCC TCGTCATTCT CGGCACCGTC TGGATCGATC AGATCCGCAA TCGGAAATAA
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Protein sequence | MAEIITDKPP QADQKKGHKR GLSDRQKDII QKFAALGCLV VLAAVFALTS NAFLSVNNGM TIALQVTSIA FLGIGATYVI ITGGIDLSVG SVLALAGVVA ALAVKELGAP VWIGMVLGVL TGTACGVING LVITRLKLPP FIATLGMMLI ARGVALQITG ARAVSGLGES FGVLGNGSLL RFESIDDQGF PVVSFPGIPY PVVLMVVIAV AAAFVLNRTV LGRHIYATGS NADAAQLSGV NVARVTAFTY IVSGTLAGLT GCMLMSRLVT AQPNEGVAYE LDAIASAVIG GTSLIGGVGT ISGTFIGAFV IGILRNGLNM NGVSAFTQQI IIGLVILGTV WIDQIRNRK
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