| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5133 |
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| Symbol | rbsB |
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| ID | 7380936 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 121592 |
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| End bp | 122533 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643648789 |
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| Product | ABC transporter substrate binding protein (ribose) |
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| Protein accession | YP_002547026 |
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| Protein GI | 222106235 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.533317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCGTAAAC TAGCCCTGGC CCTTGCGGCT TCAGTCTTTA CACTGTCGGG CGCGCTCACC
GCTTCGGCGG GCGAAATCGC CGTGATCGTC AAGACAGTCA ACTCCACCTT CTGGCAGAAC
GTCCAGAAGG GCGCGGATGC CGCGATTGGC AAGCAGAAGG CCCATACGAT AACCTTCCAG
GGTCCGGCTG CGGAATCCGC CATTGCCGAT CAGGTCAATA TGGTCGAGAA CGCCGTGAAC
CGGAAGGTCG ATGCCATCCT GCTTGCGCCA TCCGACCCGG ACGCACTGGT CCCGGCGGTG
AAGAAGGCCT GGGAAGCCCG CATTCCCGTC GTCATCATTG ACTCGATGCT CTCGAAGGAT
GCCGAGAAAT ATTACCAGGC CTTCCTGGCG ACGGACAACA AGGCCGCCGG TGAACTGGCG
GCCAAGGCGA TGATCCAGAA AGTCGGGACC GAAGGCAAGA TCGCCGTGAT GTCCTATGTC
GCAGGTGCCG GTTCCGAAAT CGGCCGCGTT GGCGGCTTTA CCGACTACAT CAAGGCAAAC
TCGAAACTCC AGATCGTCGG CCCCTACTAT TCGCAGTCGC AGATGGCGAC CGCGCTGAAC
CAGACGACCG ACGTTCTTGC CGCCAATGCC GACCTGAAGG GCATATTCGG CGCCAATGAG
CCGACCGCCA TCGGCATGGG CCGGGCGATC AAGCAGGCTG GCAAGGCTGG CAAGCTCGTC
GCCATCGGCT TTGACGGCAA CCAGGACCTT CAGGAATTCG TCAAGGATGG CACACTGGAA
GCCACCGTCG TCCAGGGTTC CTATCAGATG GGTGAAAAGG GCGTGGATAC GCTTTTGAAG
CTTCTGTCGA AGGAAAAGGT CGAAAAGTTC ATCGACACCG GCGTCGTGGT CGTCACCAAG
CAGAACATCG ACAAGCCGGA AGCCAAGAAC GTGCTTTATT GA
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| Protein sequence | MRKLALALAA SVFTLSGALT ASAGEIAVIV KTVNSTFWQN VQKGADAAIG KQKAHTITFQ
GPAAESAIAD QVNMVENAVN RKVDAILLAP SDPDALVPAV KKAWEARIPV VIIDSMLSKD
AEKYYQAFLA TDNKAAGELA AKAMIQKVGT EGKIAVMSYV AGAGSEIGRV GGFTDYIKAN
SKLQIVGPYY SQSQMATALN QTTDVLAANA DLKGIFGANE PTAIGMGRAI KQAGKAGKLV
AIGFDGNQDL QEFVKDGTLE ATVVQGSYQM GEKGVDTLLK LLSKEKVEKF IDTGVVVVTK
QNIDKPEAKN VLY
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