| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5130 |
|---|
| Symbol | |
|---|
| ID | 7380934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Agrobacterium vitis S4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011988 |
|---|
| Strand | - |
|---|
| Start bp | 119703 |
|---|
| End bp | 120515 |
|---|
| Gene Length | 813 bp |
|---|
| Protein Length | 270 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 643648787 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002547024 |
|---|
| Protein GI | 222106233 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3618] Predicted metal-dependent hydrolase of the TIM-barrel fold |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCATCG ATGCCCATCA GCATTTCTGG CTCATGAAAA ACCGGCAAGG CCAATGGCCC
CCACCGGAAC TTGCCACCAT TCACCGGGAT TTCGGGACCG TAGACTTAGA GCCGCAACTG
TCAGCGACGG GCGTTGGGGG GACGGTTCTG GTTCAATCAC TGCCGAGCAT TGATGACACG
CGATTCCTGC TGGATCTGGC GCAACACCAT GATTTCATTC TTGGCGTGGT GGGCTGGGTT
GACCTGAAGG CGGCGGACGC GGCCACCCTC ATCACGGAAC TGGCGACCTA TCCGAAGCTG
AAGGGCCTGC GCCCGATGGT GCAGGATATT GCCGAGGATG ACTGGATCGA CGATCCCGCA
CTCGACCCGG CCATCGGGGC GATGCTGGCG TCGGGTCTCA CCTTCGACGC GCTGGTTCTG
CCCCGCCACC TCGCACCATT GGAGAGGTTT GCGCGCCGGT ATCCCGCTCT TCCTGTCGTC
ATCGATCACG GGGCAAAACC CGTCATCGCC CAAGGGCTCT ATAGCGACTG GCGCACGGCC
ATGACGCGGC TTGCCGACCT GGAAAACATC TCATGCAAGC TATCCGGCCT GCTGACCGAA
GCCGGTGCGC AGCAGCCCGA AGCCATTCGT CCCTATGCCG AGACGATCCT CGAACTCTTT
GGGCCGGAGC GGGTGATGTG GGGCAGCGAC TGGCCCGTGC TGAACCTCGT CAGCGATTAT
GACAGCTGGT TTGCCCAGGC CCGCGCCATC GTGCCGGAAG CCGCACATGA TCGGGTGTTT
TGTGAAAATG CCCGCCGCTT CTATGGCCTT TGA
|
|---|
| Protein sequence | MIIDAHQHFW LMKNRQGQWP PPELATIHRD FGTVDLEPQL SATGVGGTVL VQSLPSIDDT
RFLLDLAQHH DFILGVVGWV DLKAADAATL ITELATYPKL KGLRPMVQDI AEDDWIDDPA
LDPAIGAMLA SGLTFDALVL PRHLAPLERF ARRYPALPVV IDHGAKPVIA QGLYSDWRTA
MTRLADLENI SCKLSGLLTE AGAQQPEAIR PYAETILELF GPERVMWGSD WPVLNLVSDY
DSWFAQARAI VPEAAHDRVF CENARRFYGL
|
|---|
| |