Gene Avi_5125 details

Gene Information

• Locus tag: Avi_5125
• Symbol: phoP
• ID: 7380929
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Agrobacterium vitis S4
• Kingdom: Bacteria
• Replicon accession: NC_011988
• Strand: +
• Start bp: 114274
• End bp: 114942
• Gene Length: 669 bp
• Protein Length: 222 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 643648782
• Product: two component response regulator
• Protein accession: YP_002547019
• Protein GI: 222106228
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCGCGTAC TGCTCGTCGA AGACGATGAA GACCTGAGTG GCCGGATCGC CACTGCGCTC 
AGGTCGGAGA ACTTCGTGGT CGACATCGCC CGCAATGGCG AGGACGCGCT CCATGCCGGA 
CTGACCGAGT TGTTCGACAT TGCCGTGCTT GATCTCGGGT TACCGAAGAT CGATGGCGTC 
ACGGTTCTAA AGGGGTGGCG CGAAAGCGAA CGCAATCTCC CCGTCCTTGT CCTGACGGCG 
CGTGACGGCT GGCCGGACAA GGTATCGAGC TTCAAGGCCG GTGCCGACGA CTTCCTTGCA 
AAGCCGTTCA AAATTGAAGA GCTGGTGCTG AGGCTGCGGG CCTTGGTGCG CCGGGCAACC 
GGCCATGCTT CTTCACGCAT TCAATGTGGC GCACTGATGT TTGACGCCCA GCTTGGCACA 
TTTGAGCTGA ATGGACTTCC AGTCAAACTG ACTGCGCTGG AATGGCGGGT CCTGTCATGC 
CTCATGCTCA GGAAGGAGAT GGTTGTTGAT CGGCGCGAGC TGAATGAGCG GGTTTACGAC 
GGAGACGCTG AGGTGGATTC CAACTCCATC GAAGTCATCA TCGCAAGGCT GCGCAAAAAG 
CTTGGTTCTG AAATTATCGA GACCGTCCGC GGTCGGGGCT ATATGCTGAC AGCGCCGGTG 
CAATCATGA 

 

Protein sequence

MRVLLVEDDE DLSGRIATAL RSENFVVDIA RNGEDALHAG LTELFDIAVL DLGLPKIDGV 
TVLKGWRESE RNLPVLVLTA RDGWPDKVSS FKAGADDFLA KPFKIEELVL RLRALVRRAT 
GHASSRIQCG ALMFDAQLGT FELNGLPVKL TALEWRVLSC LMLRKEMVVD RRELNERVYD 
GDAEVDSNSI EVIIARLRKK LGSEIIETVR GRGYMLTAPV QS