| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5120 |
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| Symbol | agpA |
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| ID | 7380924 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 108151 |
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| End bp | 110238 |
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| Gene Length | 2088 bp |
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| Protein Length | 695 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643648777 |
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| Product | ABC transporter substrate binding protein (alpha-galactoside) |
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| Protein accession | YP_002547014 |
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| Protein GI | 222106223 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0244807 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAGCG TCACCCATAC CGCAAAGACT GCTGCCCTGT TGCTGGGCGT GTCGGTTTTT
GCTGTTGCAG CCTTTGCGTC TGAGCCCACC GTCGTGCCCG AAGCTCCTCC CTTTCCGGGA
CAAGGCAAGA TCACCTATGT GCCACGGGAT TCCATTGAAG AGTTCAAGGC TCTTCCGAGT
TACAGCGAGC CGGATTGGGT GACGGAGAAA TTCGTCAAAA CTGGTAAACT GCCGTCGGTG
AAGGAGCGCC TACCGAAAGA GCCACTGGTG TTCAAGACCG GCAATATGCC CGATGGCATC
GGTGTCTATG GCGATACCTT GCGCCACGTG ATTGGTGGCA GGCCCGAGGG CTGGAACTAT
TCGGCGGGCC AGACCCAAGG CTGGGGCGGT ATCGACATTG CCATGTCGGA ATGCCTCACC
CGTACAGCCC CGCTGTTTCA GGTGAAGGCC GATGATGTCG AACCTTTGCC CAATCTGGCC
AAGAGCTGGG ATTGGTCTGC GGATGGACAC AAGTTGACCA TGCATCTGAT TGAGGGCGCA
AAATGGTCGG ATGGCGTGCC GTTCACCTCC GATGATGTGA TGTTCTACTG GAATGACAAT
GTTCTGGACA GAAATGTCAC GCCCTTGAAC GGCGCAACGC CGGAAACCTT TGGTGAAGGC
ACGACACTGA AGGCCATTGA TGATTATACC GTCGAATGGA CCTTCAAAGA GGCATTTCCA
CGGCAATATC TGTTCGCCAT GGCTTACGGA ACATTCTGCC CCGGCCCGGC CCATATCCTC
AAAACCAAAC ACCCGAAATA TGCCAGGGAC TTCACCTATG ATCAGTATAA AAACGGCTTT
CCGCCTGAAT ATATGAACAT TCCGGTGATG GGTGCCTGGG TGCCCGTGTC CTATCGTCCT
GACGATATGA TCGTGCTGCG CCGCAATCCC TATTACTGGA AGGTGGATGA GCAGGGGCAT
CAACTGCCTT ATATCAATGA GCTTCACTAC AAACTCTCCA CATGGGCTGA CCGCGATGTG
CAGGCGATTG CAGGCTCCGG GGACCTGTCC AATCTTGAGC AGCCGGAGAA TTTTGTCGAA
AGCCTGAAGC GGGCAGCGCA GCCATCTGCC CCTTCCCGCC TTGCCTTTGG CGCGCGTCTG
ATCGGCTATA ATCTGCGGCT CAACTATTCG GCCAATGGCT GGGGTGATCC CGATGCGCGC
GGTCAGGCGG TGCGCGAGCT GAACCGCAAT CCCGATTTCC GCAAAGCCAT TACCATGGCA
CTGGATCGTA AGAAGATCGG GGAATCGCTG GTTAAGGGAC CGTTCACCGC CATTTATCCG
GGCGGATTGT CGTCAGGAAC GAGCTTTTAT GATCGCCAGT CAACGATCTA TTATCCCTTC
GATCTGGCCG GTGCCAAGGC ACTTCTGGCC AAGGCCGGGC TGAAGGATAC CGATGGCGAC
GGCTTCGTCA ATTTCCCGGC GGGCGTGGCG GGTGGTCAGG ATGTGCAGAT CGTTCTGCTG
TCCACTTCAG ACTATGGAAC CGATCGAAAC CTTGCCGAAG GTGTGATTGG CCAGATGGAA
AAGCTCGGCC TGAAAGTGGT GCTGAACTCA CTGGATGGTG TCAAACGCGA TCAAGCCAAT
TTTGGCGGCC GGTTCGATTG GATGATCCGC CGCAATGATC CCGACATGAC ATCCGTGGTG
CAAAACACCG CCCAATTGGC GCCGACCGGA CCACGCACCA GCGGGCATCA CCGCGCGGGG
AAGGACGGCA CGGTTGATCT GATGCCCTAT GAGAAGCAGC TGGTTGCCAT CGTCAACAGG
TTCATTGCGT CTCAGGACAA TGTCGAGCGA CGGGATTTAA TGAAACAGTA TCAGAAAATC
GCCACTGAAA ATGTCGATAC CATCGGACTG ACGGAATATC CGGGTGCGCT GATCATCAAC
AAGCGGTTCT CCAATGTTCC AGTCGGCGCT CCGATCTTCA TGTTCAACTG GGCGGAAGAC
ACCATCATCC GCGAACGCAT GTTTGTGGCC GCAGACAAGC AGGGTGATTT TGAGCTGTTC
AAAAACCAGC TTCCCGGCAA GCCGGGCGAA AACAAACCTC TCAACTGA
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| Protein sequence | MKSVTHTAKT AALLLGVSVF AVAAFASEPT VVPEAPPFPG QGKITYVPRD SIEEFKALPS
YSEPDWVTEK FVKTGKLPSV KERLPKEPLV FKTGNMPDGI GVYGDTLRHV IGGRPEGWNY
SAGQTQGWGG IDIAMSECLT RTAPLFQVKA DDVEPLPNLA KSWDWSADGH KLTMHLIEGA
KWSDGVPFTS DDVMFYWNDN VLDRNVTPLN GATPETFGEG TTLKAIDDYT VEWTFKEAFP
RQYLFAMAYG TFCPGPAHIL KTKHPKYARD FTYDQYKNGF PPEYMNIPVM GAWVPVSYRP
DDMIVLRRNP YYWKVDEQGH QLPYINELHY KLSTWADRDV QAIAGSGDLS NLEQPENFVE
SLKRAAQPSA PSRLAFGARL IGYNLRLNYS ANGWGDPDAR GQAVRELNRN PDFRKAITMA
LDRKKIGESL VKGPFTAIYP GGLSSGTSFY DRQSTIYYPF DLAGAKALLA KAGLKDTDGD
GFVNFPAGVA GGQDVQIVLL STSDYGTDRN LAEGVIGQME KLGLKVVLNS LDGVKRDQAN
FGGRFDWMIR RNDPDMTSVV QNTAQLAPTG PRTSGHHRAG KDGTVDLMPY EKQLVAIVNR
FIASQDNVER RDLMKQYQKI ATENVDTIGL TEYPGALIIN KRFSNVPVGA PIFMFNWAED
TIIRERMFVA ADKQGDFELF KNQLPGKPGE NKPLN
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