| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_5116 |
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| Symbol | |
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| ID | 7380921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011988 |
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| Strand | - |
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| Start bp | 104266 |
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| End bp | 105933 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 643648774 |
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| Product | ABC transporter nucleotide binding/ATPase protein (oligopeptide) |
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| Protein accession | YP_002547011 |
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| Protein GI | 222106220 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4172] ABC-type uncharacterized transport system, duplicated ATPase component |
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| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAAACA CCACCAATGC ATTGGCACCT GATCAGAGGC ACGATCACAC CAGCCTTCTC
GGCACGCCGA TTATCGATGC CCGCCAACTG GCCGTCTCCT TCAAGGTGGA AGGCGGCACA
GTCGAGGCGG TCAAGAATGT CTCTTTCCAG CTCTACAGAG GCGAAACCAT TGCCGTTGTT
GGCGAATCCG GTTCTGGAAA GTCGGTCACG GCCCGCAGCA TCATGGGGCT GTTGACCAAG
CGCGCCACCT TGTCGGCTCG TTCCAGCATT GCCTACGATG GGCAAAACAT CCTGAAGTTT
TCGGATCGGC AACGGCGAGC ACTTCGCGGC AATCGCATCT CGATGATTTT TCAAGAGCCG
ATGAGCTCGC TCAATCCGGT CTACACCATC GGCACACAGA TCGCAGAAGC CATCCGCGTG
CACCAGAAAA TGAGCAGCAA GCAAGCTTTT GCGCGCACAT TGGAGCTGTT GCGTCAGGTG
CAAATCCCGG AGCCGGAGGC CCGCCTCAAC CAATATCCGC ATCAATTGTC CGGCGGTCAG
CGTCAGCGCA TCATGATTGC CATGGCACTG GCCAACAACC CGGATGTGCT GATTGCCGAT
GAACCCACCA CGGCGCTGGA CGTGACCGTG CAGGCGCAGA TTCTCAACCT GATCCGCGAT
TTGCAAAAAA GCCTAGGCAT GGCGGTGATC CTGATCACCC ATGATCTCAC CGTCGTTCGG
CAATTTTCAG ACTATGTCTA TGTGATGCAA AACGGCGAGG TGAAGGAACA CAACACCACA
ACGGCGCTGT TTGAACATCC ACAACATCCC TACACCCGCC ATCTGCTGGC ATCGGAACCA
AAGGGCACGG CCAATCCCAT GCCGGTCGAC TCTACCACCA TTCTGGAAGG GCGCGATGTG
CGTGTGTCTT TCATGCTAAA GCATGGTGGC TTTTTCAAAC CACAGTTGAA AGAGCTGGTC
GCCGTCAACA GCCTTTCCAT CACCCTGCAT CGCCATGAAA CGCTGGGTTT GGTGGGCGAG
AGTGGTTCCG GCAAAACCAC CTTTGGCCAA GCCCTTGTCA AACTGATGAG TGTTGATAGC
GGCAAGATCC TGTTCGACGG CCAAGCCATA GAGAACAACA GCCGCGAACA AATGCGACCT
TTGCGCTCGC GTATCCAGGT GGTGTTTCAA GACCCGTTTT CTTCACTCAA CCCGCGCATG
TCGGTAGGCC AGATCATTGA GGAAGGCTTG ATCGTCAACA ATATCGGCAC AAGCCGCAGT
GAGCGGCTGG ACCGCGTGCG CGAGGCGCTG ATCAGCGCCG GAATGCCCGG CAACATCCTG
TCGCGGTTTC CGCATGAATT TTCCGGTGGC CAACGCCAGC GGATTGCCAT TGCGCGGGCG
GTGGCGCTGG AGCCGGAATT CATCCTGCTG GATGAGCCGA CATCGGCGCT CGATTTATCC
GTTCAAGCCC AGATCATCGA CCTGTTGCGC AAGCTTCAGG ATGAAAAGGG CCTGAGCTAT
CTCTTCATTT CCCATGATCT CAAGGTTGTC CGCGCGCTTT GCCACCGGGT TGCGGTGATG
CAGCACGGGC AGATCGTTGA GCAAGGACCT GTTGAGGACA TCCTCAGCCA TCCCAAAACC
GCCTACACCC AGCGGCTCGT CAGAGCTGCT TTCAACGTCG CCACATAA
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| Protein sequence | MANTTNALAP DQRHDHTSLL GTPIIDARQL AVSFKVEGGT VEAVKNVSFQ LYRGETIAVV
GESGSGKSVT ARSIMGLLTK RATLSARSSI AYDGQNILKF SDRQRRALRG NRISMIFQEP
MSSLNPVYTI GTQIAEAIRV HQKMSSKQAF ARTLELLRQV QIPEPEARLN QYPHQLSGGQ
RQRIMIAMAL ANNPDVLIAD EPTTALDVTV QAQILNLIRD LQKSLGMAVI LITHDLTVVR
QFSDYVYVMQ NGEVKEHNTT TALFEHPQHP YTRHLLASEP KGTANPMPVD STTILEGRDV
RVSFMLKHGG FFKPQLKELV AVNSLSITLH RHETLGLVGE SGSGKTTFGQ ALVKLMSVDS
GKILFDGQAI ENNSREQMRP LRSRIQVVFQ DPFSSLNPRM SVGQIIEEGL IVNNIGTSRS
ERLDRVREAL ISAGMPGNIL SRFPHEFSGG QRQRIAIARA VALEPEFILL DEPTSALDLS
VQAQIIDLLR KLQDEKGLSY LFISHDLKVV RALCHRVAVM QHGQIVEQGP VEDILSHPKT
AYTQRLVRAA FNVAT
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